Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P46505

Metabolite ID
P46505
Deionized mass
190.1345 Da
Average m/z
191.1414
Average RT
24.1147
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
55
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

55 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.15G005000 hypothetical protein AT4G37850:AT4G37850:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 4Chr15:439582–444257 (-)4.759e-12
Glyma.18G236400 hypothetical protein NA 3Chr18:52477172–52481624 (-)4.759e-12
Glyma.09G041000 hypothetical protein AT3G06770:AT3G06770:Pectin lyase-like superfamily protein 2Chr09:3405065–3408889 (-)2.3e-13
Glyma.15G004800 hypothetical protein AT1G80610:AT1G80610:uncharacterized protein 2Chr15:424311–429405 (+)4.759e-12
Glyma.15G005500 hypothetical protein AT1G15780:NRB4:mediator of RNA polymerase II transcription subunit 15a-like protein 2Chr15:479322–491224 (+)4.759e-12
Glyma.15G011300 hypothetical protein NA 2Chr15:862548–865052 (-)4.759e-12
Glyma.18G235900 hypothetical protein AT1G01580:FRO2:ferric reduction oxidase 2 2Chr18:52443073–52448797 (-)4.759e-12
Glyma.18G236800 hypothetical protein AT2G46070:MPK12:mitogen-activated protein kinase 12 2Chr18:52562784–52568422 (-)4.759e-12
Glyma.18G237300 hypothetical protein AT4G01320:ATSTE24:Peptidase family M48 family protein 2Chr18:52606766–52614841 (-)4.759e-12
Glyma.18G283800 BZIP55 bZIP transcription factor 55 NA 2Chr18:56445016–56451963 (+)4.759e-12
Glyma.07G246800 hypothetical protein AT3G16630:KINESIN-13A:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr07:42568653–42576617 (-)2.3e-13
Glyma.07G246900 hypothetical protein AT3G06910:ULP1A:UB-like protease 1A__AT4G00690:ULP1B:UB-like protease 1B__AT4G15880:ESD4:Cysteine proteinases superfami… 1Chr07:42581544–42589124 (-)2.3e-13
Glyma.07G247000 hypothetical protein NA 1Chr07:42591461–42592588 (-)2.3e-13
Glyma.09G040600 hypothetical protein NA 1Chr09:3385940–3388420 (+)2.3e-13
Glyma.15G004300 hypothetical protein NA 1Chr15:390297–394072 (+)4.759e-12
Glyma.15G004500 hypothetical protein NA 1Chr15:401329–403329 (+)4.759e-12
Glyma.15G004700 hypothetical protein NA 1Chr15:405502–410429 (-)4.759e-12
Glyma.15G005100 hypothetical protein NA 1Chr15:452246–457467 (+)4.759e-12
Glyma.15G005300 hypothetical protein AT2G26000:BRIZ2:zinc finger (C3HC4-type RING finger) family protein 1Chr15:463317–466719 (-)4.759e-12
Glyma.15G005800 hypothetical protein AT1G80520:AT1G80520:Sterile alpha motif (SAM) domain-containing protein 1Chr15:498585–501089 (-)4.759e-12
Glyma.15G006100 hypothetical protein AT1G80490:TPR1:TOPLESS-related 1 1Chr15:529618–538294 (+)4.759e-12
Glyma.15G006300 hypothetical protein AT3G18430:AT3G18430:Calcium-binding EF-hand family protein 1Chr15:541804–545718 (-)4.759e-12
Glyma.15G006700 hypothetical protein AT1G15310:ATHSRP54A:signal recognition particle 54 kDa subunit 1Chr15:562809–566994 (-)4.759e-12
Glyma.15G006800 hypothetical protein NA 1Chr15:566735–567753 (+)4.759e-12
Glyma.15G007100 hypothetical protein AT1G80070:SUS2:Pre-mRNA-processing-splicing factor 1Chr15:584884–596331 (+)4.759e-12
Glyma.15G007200 hypothetical protein AT3G15890:AT3G15890:Protein kinase superfamily protein 1Chr15:597008–599998 (-)4.759e-12
Glyma.15G007300 hypothetical protein AT1G80090:CBSX4:Cystathionine beta-synthase (CBS) family protein 1Chr15:607564–610294 (+)4.759e-12
Glyma.15G008100 hypothetical protein AT3G15770:AT3G15770:uncharacterized protein 1Chr15:657007–662572 (-)4.759e-12
Glyma.15G009000 RHOMBOID-like protein 5 NA 1Chr15:709149–711293 (+)4.759e-12
Glyma.15G009400 hypothetical protein AT2G34160:AT2G34160:Alba DNA/RNA-binding protein 1Chr15:732849–735829 (-)4.759e-12
Glyma.15G011400 hypothetical protein AT1G15490:AT1G15490:alpha/beta-Hydrolases superfamily protein 1Chr15:869245–874642 (-)4.759e-12
Glyma.18G235800 hypothetical protein AT3G61480:AT3G61480:Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor__AT5… 1Chr18:52428946–52442014 (+)4.759e-12
Glyma.18G236000 hypothetical protein AT4G00300:AT4G00300:receptor-like kinase 1Chr18:52454316–52456921 (-)4.759e-12
Glyma.18G236100 hypothetical protein NA 1Chr18:52461067–52462184 (-)4.759e-12
Glyma.18G236200 hypothetical protein AT1G69070:AT1G69070:nucleolar-like protein 1Chr18:52464328–52470720 (+)4.759e-12
Glyma.18G236300 hypothetical protein NA 1Chr18:52471863–52475754 (-)4.759e-12
Glyma.18G236500 hypothetical protein NA 1Chr18:52478357–52479307 (+)4.759e-12
Glyma.18G236600 hypothetical protein AT5G42340:PUB15:Plant U-Box 15 1Chr18:52488662–52492060 (+)4.759e-12
Glyma.18G236700 hypothetical protein AT3G61490:AT3G61490:Pectin lyase-like superfamily protein 1Chr18:52558809–52562720 (+)4.759e-12
Glyma.18G237000 hypothetical protein AT4G01360:BPS3:BPS1-like protein__AT2G46080:BPS2:BPS1-like protein 1Chr18:52572203–52575310 (-)4.759e-12
Glyma.18G237200 hypothetical protein AT2G25570:AT2G25570:binding protein 1Chr18:52597022–52603930 (-)4.759e-12
Glyma.18G237600 hypothetical protein AT4G01290:AT4G01290:chorismate synthase 1Chr18:52623526–52629643 (+)4.759e-12
Glyma.18G237700 hypothetical protein AT4G01280:AT4G01280:Homeodomain-like superfamily protein 1Chr18:52631633–52637246 (-)4.759e-12
Glyma.18G238000 hypothetical protein AT1G01490:AT1G01490:Heavy metal transport/detoxification superfamily protein 1Chr18:52679724–52682816 (+)4.759e-12
Glyma.18G238700 hypothetical protein AT1G01470:LEA14:Late embryosis abundant protein__AT2G46140:AT2G46140:Late embryosis abundant protein 1Chr18:52756503–52759147 (+)4.759e-12
Glyma.18G238800 hypothetical protein NA 1Chr18:52766041–52769552 (+)4.759e-12
Glyma.18G239000 hypothetical protein NA 1Chr18:52786341–52791907 (+)4.759e-12
Glyma.18G239200 hypothetical protein AT2G46180:GC4:golgin Putative 4 1Chr18:52799308–52808909 (+)4.759e-12
Glyma.18G239300 hypothetical protein AT2G46170:AT2G46170:Reticulon family protein 1Chr18:52810679–52813112 (-)4.759e-12
Glyma.18G240900 hypothetical protein AT1G65320:CBSX6:Cystathionine beta-synthase (CBS) family protein 1Chr18:52946564–52950484 (+)4.759e-12
Glyma.18G241300 hypothetical protein AT5G16540:ZFN3:zinc finger nuclease 3 1Chr18:52986384–52995320 (-)4.759e-12
Glyma.18G284200 hypothetical protein AT1G10840:TIF3H1:translation initiation factor 3 subunit H1 1Chr18:56482736–56486831 (-)4.759e-12
Glyma.18G284300 hypothetical protein AT1G27980:DPL1:dihydrosphingosine phosphate lyase 1Chr18:56489793–56496952 (+)4.759e-12
Glyma.18G286300 hypothetical protein NA 1Chr18:56657022–56662164 (+)4.759e-12
Glyma.18G287100 hypothetical protein NA 1Chr18:56710302–56713686 (-)4.759e-12