Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P46498

Metabolite ID
P46498
Deionized mass
677.3659 Da
Average m/z
678.3762
Average RT
24.0989
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
49
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

49 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)1.268e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)8.051e-14
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)1.754e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)2.553e-12
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)7.726e-11
Glyma.03G124500 hypothetical protein NA 1Chr03:33758928–33762195 (+)6.161e-12
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)2.149e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)4.379e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)3.424e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)3.425e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.04e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)9.172e-13
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)9.172e-13
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)9.172e-13
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)4.567e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)7.584e-11
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)2.977e-11
Glyma.06G200200 hypothetical protein NA 1Chr06:18327920–18331068 (-)5.592e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)6.989e-13
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)2.553e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)2.553e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)2.553e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)2.553e-12
Glyma.08G182000 hypothetical protein NA 1Chr08:14601875–14604750 (+)5.757e-11
Glyma.08G183700 Fasciclin-like arabinogalactan protein 19 NA 1Chr08:14738283–14742033 (+)6.94e-11
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)4.507e-11
Glyma.09G252100 hypothetical protein AT1G79790:FHY1:Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 1Chr09:47245185–47248478 (+)5.554e-11
Glyma.10G265400 hypothetical protein AT2G01290:RPI2: 1Chr10:48921268–48922795 (+)8.649e-12
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)6.601e-11
Glyma.12G001400 hypothetical protein AT1G72090:AT1G72090:Methylthiotransferase 1Chr12:113763–118480 (+)1.972e-13
Glyma.12G001600 PM27 seed maturation protein PM27 AT1G22600:AT1G22600:Late embryosis abundant protein (LEA) family protein__AT1G72100:AT1G72100:late embryosis abundant d… 1Chr12:127545–128932 (+)1.972e-13
Glyma.12G001700 hypothetical protein AT1G22570:AT1G22570:Major facilitator superfamily protein__AT1G22550:AT1G22550:Major facilitator superfamily protein 1Chr12:132389–134935 (+)1.972e-13
Glyma.12G002400 hypothetical protein AT5G47850:CCR4:CRINKLY4 related 4 1Chr12:197288–200229 (+)2.467e-12
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)1.946e-11
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)5.37e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)1.268e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)1.268e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)1.268e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)1.268e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)4.312e-14
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)1.754e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)1.754e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)7.48e-13
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)5.833e-14
Glyma.16G189000 hypothetical protein NA 1Chr16:35160485–35167548 (-)2.301e-13
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)1.639e-11
Glyma.16G189200 hypothetical protein AT3G48970:AT3G48970:Heavy metal transport/detoxification superfamily protein 1Chr16:35177846–35179798 (+)1.465e-13
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)5.177e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)2.217e-11