Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P46477

Metabolite ID
P46477
Deionized mass
182.0732 Da
Average m/z
183.0801
Average RT
24.0619
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
47
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

47 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)9.704e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)1.586e-11
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)5.27e-12
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)5.27e-12
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)5.27e-12
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)5.368e-13
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)2.857e-12
Glyma.01G040000 hypothetical protein NA 1Chr01:4336374–4338196 (+)4.232e-11
Glyma.01G231400 hypothetical protein AT4G25340:FKBP53:FK506 BINDING PROTEIN 53 1Chr01:55836387–55840615 (+)8.647e-11
Glyma.01G234100 hypothetical protein AT5G13270:RARE1:Pentatricopeptide repeat (PPR) superfamily protein 1Chr01:56022128–56026001 (+)2.775e-12
Glyma.01G235200 hypothetical protein AT1G05460:SDE3:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr01:56103784–56110667 (-)4.631e-12
Glyma.02G203800 hypothetical protein AT4G30935:WRKY32:WRKY DNA-binding protein 32 1Chr02:38920714–38930381 (+)7.571e-11
Glyma.02G305900 hypothetical protein AT5G35750:HK2:histidine kinase 2 1Chr02:48055694–48067169 (+)7.171e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)1.203e-14
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)8.631e-14
Glyma.04G234900 hypothetical protein AT5G53000:TAP46:2A phosphatase associated protein of 46 kD 1Chr04:50332008–50336222 (-)5.256e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.448e-11
Glyma.06G131700 hypothetical protein NA 1Chr06:10850105–10855203 (+)1.355e-12
Glyma.06G132100 hypothetical protein NA 1Chr06:10873977–10879178 (-)1.355e-12
Glyma.06G200200 hypothetical protein NA 1Chr06:18327920–18331068 (-)6.617e-11
Glyma.07G074200 hypothetical protein NA 1Chr07:6770137–6772132 (+)5.177e-11
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 1Chr08:9065033–9071774 (-)9.544e-11
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)9.544e-11
Glyma.08G118500 hypothetical protein NA 1Chr08:9161382–9162471 (+)6.255e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)1.586e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)1.586e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.586e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.586e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)7.102e-12
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)5.27e-12
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)5.27e-12
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)5.27e-12
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)5.27e-12
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)5.27e-12
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)2.726e-11
Glyma.09G280300 hypothetical protein AT2G38480:AT2G38480:Uncharacterized protein family (UPF0497) 1Chr09:49547489–49550731 (-)1.715e-14
Glyma.09G281400 hypothetical protein AT3G18620:AT3G18620:DHHC-type zinc finger family protein 1Chr09:49668985–49676216 (-)3.935e-12
Glyma.09G281700 hypothetical protein NA 1Chr09:49705303–49733182 (-)3.934e-12
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)8.299e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)1.122e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)8.492e-11
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)6.717e-11
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)7.316e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)2.159e-11
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)9.704e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)1.763e-12
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)1.763e-12