Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P46449

Metabolite ID
P46449
Deionized mass
508.3341 Da
Average m/z
509.3406
Average RT
24.0418
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
113
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

113 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)3.762e-12
Glyma.20G122600 hypothetical protein AT2G01130:AT2G01130:DEA(D/H)-box RNA helicase family protein 3Chr20:36527607–36546140 (-)7.384e-12
Glyma.02G202100 hypothetical protein AT3G52610:AT3G52610:GATA zinc finger protein 2Chr02:38707852–38719801 (+)8.218e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)2.832e-12
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)2.14e-11
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 2Chr14:5675792–5680343 (+)9.231e-13
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.803e-15
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)7.574e-17
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)1.071e-13
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)4.126e-11
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1134716–1143232 (+)9.275e-16
Glyma.02G193800 hypothetical protein AT5G06470:AT5G06470:Glutaredoxin family protein 1Chr02:36706657–36712744 (-)3.207e-12
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)8.781e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.508e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)1.555e-18
Glyma.04G014300 hypothetical protein AT1G20880:AT1G20880:RNA-binding (RRM/RBD/RNP motifs) family protein 1Chr04:1101709–1106543 (+)8.909e-11
Glyma.04G014600 hypothetical protein NA 1Chr04:1119108–1123175 (+)8.909e-11
Glyma.04G015500 hypothetical protein AT2G33670:MLO5:Seven transmembrane MLO family protein 1Chr04:1176657–1181234 (-)7.908e-12
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)2.431e-14
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.04e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)2.597e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.597e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.597e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)9.204e-13
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.548e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.56e-11
Glyma.06G078400 hypothetical protein AT4G31290:AT4G31290:ChaC-like family protein 1Chr06:6068728–6071360 (+)1.613e-11
Glyma.06G079400 hypothetical protein NA 1Chr06:6105463–6107101 (+)3.27e-12
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)8.407e-11
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)8.409e-11
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)8.409e-11
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)3.605e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)7.621e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)7.621e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)7.621e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)8.795e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)8.795e-11
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)5.693e-11
Glyma.06G129800 hypothetical protein AT5G53030:AT5G53030:uncharacterized protein 1Chr06:10667029–10669377 (+)9.249e-11
Glyma.06G130100 hypothetical protein AT3G49290:ABIL2:ABL interactor-like protein 2 1Chr06:10695256–10699675 (+)9.249e-11
Glyma.06G130300 hypothetical protein AT5G53080:AT5G53080:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr06:10709045–10716245 (-)5.578e-11
Glyma.06G133700 Pyridoxal reductase, chloroplastic AT5G53580:PLR1:NAD(P)-linked oxidoreductase superfamily protein 1Chr06:10995438–10999422 (-)3.544e-11
Glyma.06G134900 hypothetical protein AT4G27670:HSP21:heat shock protein 21 1Chr06:11083841–11088991 (+)4.411e-11
Glyma.06G136200 hypothetical protein AT5G54170:AT5G54170:Polyketide cyclase/dehydrase and lipid transport superfamily protein 1Chr06:11160066–11162505 (-)1.771e-13
Glyma.06G303300 hypothetical protein NA 1Chr06:49275774–49276891 (+)4.328e-12
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)3.762e-12
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)3.762e-12
Glyma.07G071800 hypothetical protein AT4G20960:PyrD:Cytidine/deoxycytidylate deaminase family protein 1Chr07:6523253–6526707 (+)7.119e-11
Glyma.07G078300 hypothetical protein NA 1Chr07:7150800–7154478 (-)4.272e-12
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.08e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)2.832e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)2.832e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)2.832e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)2.832e-12
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)5.29e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)5.234e-12
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)5.518e-12
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)5.518e-12
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)6.763e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)6.763e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)6.763e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)6.763e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)3.826e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.685e-12
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)6.196e-11
Glyma.11G237700 hypothetical protein NA 1Chr11:33203513–33233708 (-)3.119e-11
Glyma.12G008300 hypothetical protein AT3G21640:TWD1:FKBP-type peptidyl-prolyl cis-trans isomerase family protein 1Chr12:613939–617457 (+)1.51e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)2.414e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)8.396e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)8.396e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)1.876e-15
Glyma.13G156200 hypothetical protein AT1G80710:DRS1:DROUGHT SENSITIVE 1 1Chr13:27115515–27118951 (+)2.734e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)7.292e-15
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)5.987e-16
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 1Chr14:6037810–6041899 (+)6.785e-11
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)6.785e-11
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)3.37e-12
Glyma.14G094200 hypothetical protein AT5G11840:AT5G11840:YCF36, putative (DUF1230) 1Chr14:8770378–8774149 (-)8.57e-11
Glyma.14G094300 hypothetical protein NA 1Chr14:8771316–8772515 (+)8.57e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)2.823e-14
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)7.574e-17
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.071e-13
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)7.491e-11
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)7.424e-14
Glyma.15G111000 hypothetical protein AT1G62305:AT1G62305:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein__AT1G11940:AT1G11940:Cor… 1Chr15:8692505–8697919 (-)3.317e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)5.923e-15
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)6.848e-12
Glyma.16G019400 SHAT1-5 NAC domain-containing protein 43-like NA 1Chr16:1725643–1728272 (+)2.966e-11
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)3.707e-13
Glyma.16G020500 hypothetical protein AT4G00870:AT4G00870:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr16:1877938–1879947 (-)1.129e-11
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)4.517e-13
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)4.517e-13
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)8.523e-11
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)2.252e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)1.892e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)1.261e-11
Glyma.16G180100 hypothetical protein NA 1Chr16:34070806–34076053 (+)8.39e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)9.548e-11
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)2.036e-11
Glyma.17G004500 hypothetical protein AT5G47800:AT5G47800:Phototropic-responsive NPH3 family protein 1Chr17:444580–451107 (-)1.02e-11
Glyma.17G005900 hypothetical protein AT4G17215:AT4G17215:Pollen Ole e 1 allergen and extensin family protein__AT2G40113:AT2G40113:Pollen Ole e 1 allergen an… 1Chr17:546212–548525 (+)1.02e-11
Glyma.17G214600 hypothetical protein NA 1Chr17:36049053–36054871 (-)2.187e-11
Glyma.17G251200 hypothetical protein NA 1Chr17:40605249–40607536 (+)6.373e-12
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)3.483e-14
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)3.159e-16
Glyma.19G128100 hypothetical protein NA 1Chr19:38728037–38732422 (+)1.651e-11
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)7.14e-15
Glyma.19G150000 hypothetical protein AT3G58060:AT3G58060:Cation efflux family protein 1Chr19:41018746–41025024 (+)2.143e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)1.718e-12
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)1.583e-11
Glyma.20G107500 hypothetical protein AT2G16910:AMS:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr20:35011922–35015196 (-)5.981e-12
Glyma.20G109600 hypothetical protein AT3G14290:PAE2:20S proteasome alpha subunit E2__AT1G53850:PAE1:20S proteasome alpha subunit E1 1Chr20:35200934–35205885 (-)7.407e-11
Glyma.20G122300 hypothetical protein NA 1Chr20:36506583–36511326 (-)7.384e-12