Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P46413

Metabolite ID
P46413
Deionized mass
386.2421 Da
Average m/z
387.2482
Average RT
24.0139
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
72
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

72 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)2.873e-12
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)1.6e-11
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)2.06e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)1.037e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)2.066e-14
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)2.066e-14
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)6.4e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 2Chr19:1155711–1161298 (-)4.914e-16
Glyma.19G012300 hypothetical protein NA 2Chr19:1165111–1173031 (-)4.914e-16
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)2.873e-12
Glyma.01G174300 hypothetical protein NA 1Chr01:51115502–51120201 (+)5.234e-11
Glyma.01G174600 hypothetical protein AT5G66740:AT5G66740:spindle assembly abnormal protein (DUF620) 1Chr01:51138854–51141103 (+)5.234e-11
Glyma.02G062600 hypothetical protein AT2G23540:AT2G23540:GDSL-like Lipase/Acylhydrolase superfamily protein 1Chr02:5645621–5648965 (+)7.417e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)1.938e-13
Glyma.02G253300 hypothetical protein NA 1Chr02:44063023–44065910 (-)7.51e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.732e-11
Glyma.03G119400 hypothetical protein AT5G43280:DCI1:delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 1Chr03:33050663–33053094 (+)1.161e-11
Glyma.03G137900 hypothetical protein AT3G57520:SIP2:seed imbibition 2 1Chr03:35393011–35398758 (-)5.884e-11
Glyma.03G147400 hypothetical protein NA 1Chr03:36293698–36295294 (+)6.415e-11
Glyma.04G018000 hypothetical protein AT5G42310:AT5G42310:Pentatricopeptide repeat (PPR-like) superfamily protein 1Chr04:1402993–1407323 (-)9.089e-11
Glyma.04G190200 hypothetical protein AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 1Chr04:46086785–46089618 (-)7.385e-11
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)2.401e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.506e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.011e-12
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.327e-12
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)6.431e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)6.431e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)6.431e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.661e-13
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.661e-13
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)9.391e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)5.902e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)5.902e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)5.902e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)4.005e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)2.474e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 1Chr07:1697119–1698666 (+)8.649e-12
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.635e-14
Glyma.08G031900 hypothetical protein AT4G29230:NAC075:NAC domain containing protein 75 1Chr08:2547941–2553643 (+)1.11e-14
Glyma.08G149600 hypothetical protein NA 1Chr08:11473348–11478495 (+)6.599e-11
Glyma.08G207300 hypothetical protein NA 1Chr08:16745344–16755320 (+)2.038e-11
Glyma.08G207400 hypothetical protein AT1G80000:AT1G80000:CASC3/Barentsz eIF4AIII binding protein 1Chr08:16756340–16761352 (+)2.038e-11
Glyma.08G207500 hypothetical protein NA 1Chr08:16760797–16761352 (+)2.038e-11
Glyma.08G214200 hypothetical protein AT1G80460:NHO1:Actin-like ATPase superfamily protein 1Chr08:17296769–17297666 (-)9.494e-11
Glyma.08G239500 hypothetical protein AT4G09180:FBH2:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr08:20444715–20447665 (-)1.828e-15
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)2.879e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)7.863e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)7.863e-12
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)4.268e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)4.268e-12
Glyma.12G212300 hypothetical protein AT3G58710:WRKY69:WRKY DNA-binding protein 69 1Chr12:37131153–37134096 (+)2.724e-13
Glyma.12G212800 hypothetical protein NA 1Chr12:37179924–37185798 (-)3.639e-13
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)2.284e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)1.037e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)7.908e-13
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)7.908e-13
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)2.066e-14
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)9.727e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)1.676e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)2.423e-11
Glyma.14G190300 hypothetical protein AT2G04240:XERICO:RING/U-box superfamily protein 1Chr14:45531920–45533895 (-)2.424e-11
Glyma.14G190400 hypothetical protein AT3G07650:COL9:CONSTANS-like 9 1Chr14:45536719–45544087 (-)2.424e-11
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)3.013e-13
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)4.231e-14
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)3.518e-11
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)2.345e-11
Glyma.16G159300 hypothetical protein NA 1Chr16:31903993–31908962 (+)2.985e-11
Glyma.16G160900 hypothetical protein NA 1Chr16:32013447–32016235 (+)7.271e-11
Glyma.16G161500 hypothetical protein NA 1Chr16:32076715–32092322 (-)3.896e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)9.046e-11
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)2.06e-11
Glyma.18G040000 GAI AT1G66350:RGL1:RGA-like 1__AT3G03450:RGL2:RGA-like 2 1Chr18:3278869–3281985 (-)4.885e-11