Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P46320

Metabolite ID
P46320
Deionized mass
515.2867 Da
Average m/z
516.2952
Average RT
23.9434
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
65
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

65 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)1.695e-13
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)9.723e-12
Glyma.09G053800 hypothetical protein NA 2Chr09:4737413–4755632 (-)8.038e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)3.967e-17
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)1.611e-14
Glyma.15G019600 hypothetical protein AT5G48120:MET18:ARM repeat superfamily protein 2Chr15:1524472–1536978 (-)3.223e-12
Glyma.16G072000 hypothetical protein AT1G52800:AT1G52800:2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 2Chr16:7255773–7261809 (+)8.043e-11
Glyma.20G021900 hypothetical protein AT5G37340:AT5G37340:ZPR1 zinc-finger domain protein 2Chr20:2227480–2247807 (+)3.457e-14
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)9.901e-12
Glyma.04G018000 hypothetical protein AT5G42310:AT5G42310:Pentatricopeptide repeat (PPR-like) superfamily protein 1Chr04:1402993–1407323 (-)7.643e-11
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)4.015e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)5.25e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.559e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.975e-14
Glyma.06G078400 hypothetical protein AT4G31290:AT4G31290:ChaC-like family protein 1Chr06:6068728–6071360 (+)3.493e-11
Glyma.06G129800 hypothetical protein AT5G53030:AT5G53030:uncharacterized protein 1Chr06:10667029–10669377 (+)7.34e-11
Glyma.06G130100 hypothetical protein AT3G49290:ABIL2:ABL interactor-like protein 2 1Chr06:10695256–10699675 (+)7.34e-11
Glyma.06G150700 hypothetical protein AT1G49180:AT1G49180:protein kinase family protein 1Chr06:12289992–12292323 (+)5.061e-13
Glyma.06G261500 hypothetical protein NA 1Chr06:44829183–44833460 (-)4.98e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)9.723e-12
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)9.723e-12
Glyma.08G239500 hypothetical protein AT4G09180:FBH2:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr08:20444715–20447665 (-)7.284e-13
Glyma.08G296900 hypothetical protein NA 1Chr08:41297891–41301852 (+)6.754e-12
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)8.674e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)5.363e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)5.363e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)5.485e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)5.485e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)5.485e-11
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)1.854e-12
Glyma.13G180300 hypothetical protein NA 1Chr13:29378090–29379784 (-)4.12e-11
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)2.132e-13
Glyma.14G084200 hypothetical protein NA 1Chr14:7375402–7379417 (-)2.77e-11
Glyma.14G094200 hypothetical protein AT5G11840:AT5G11840:YCF36, putative (DUF1230) 1Chr14:8770378–8774149 (-)7.455e-13
Glyma.14G094300 hypothetical protein NA 1Chr14:8771316–8772515 (+)7.455e-13
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)4.456e-13
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)1.611e-14
Glyma.14G149000 hypothetical protein NA 1Chr14:32164321–32167686 (+)8.341e-12
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)1.882e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.882e-11
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)3.649e-11
Glyma.15G019700 hypothetical protein AT3G21360:AT3G21360:2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 1Chr15:1539104–1541259 (+)2.299e-11
Glyma.15G019800 hypothetical protein AT1G51940:LYK3:protein kinase family protein / peptidoglycan-binding LysM domain-containing protein 1Chr15:1540655–1547540 (-)2.299e-11
Glyma.15G020300 hypothetical protein AT1G51950:IAA18:indole-3-acetic acid inducible 18__AT3G16500:PAP1:phytochrome-associated protein 1 1Chr15:1573643–1577917 (+)1.026e-11
Glyma.15G020800 hypothetical protein AT3G16480:MPPalpha:mitochondrial processing peptidase alpha subunit 1Chr15:1605458–1610034 (-)4.714e-11
Glyma.15G021000 hypothetical protein AT5G50340:AT5G50340:DNA repair protein RadA-like protein 1Chr15:1616486–1626531 (-)4.714e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)6.699e-11
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)4.549e-12
Glyma.16G033700 hypothetical protein NA 1Chr16:3162563–3164829 (-)3.447e-11
Glyma.16G069300 hypothetical protein AT3G01600:NAC044:NAC domain containing protein 44 1Chr16:6914905–6920531 (+)8.182e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)2.617e-11
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)1.27e-12
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)1.846e-12
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)1.506e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)1.506e-11
Glyma.17G211500 hypothetical protein AT4G32272:AT4G32272:Nucleotide/sugar transporter family protein 1Chr17:34916813–34922875 (+)7.566e-11
Glyma.17G214600 hypothetical protein NA 1Chr17:36049053–36054871 (-)2.596e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.92e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.92e-12
Glyma.20G021600 PT12 AT1G20860:PHT1;8:phosphate transporter 1;8__AT1G76430:PHT1;9:phosphate transporter 1;9 1Chr20:2196534–2205616 (+)5.989e-13
Glyma.20G022000 hypothetical protein NA 1Chr20:2262949–2267229 (+)3.457e-14
Glyma.20G022500 hypothetical protein NA 1Chr20:2342943–2353164 (+)3.251e-13
Glyma.20G094300 hypothetical protein NA 1Chr20:33753229–33754924 (-)1.389e-11
Glyma.20G094400 hypothetical protein AT5G02270:ABCI20:non-intrinsic ABC protein 9 1Chr20:33754119–33755970 (-)1.389e-11
Glyma.20G094500 hypothetical protein NA 1Chr20:33759417–33761555 (-)1.389e-11