Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P46267

Metabolite ID
P46267
Deionized mass
346.1599 Da
Average m/z
347.1665
Average RT
23.8610
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
41
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

41 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)2.434e-11
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)2.434e-11
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)2.434e-11
Glyma.18G100200 hypothetical protein NA 2Chr18:10512806–10522231 (+)1.11e-12
Glyma.20G004900 Probable xyloglucan galactosyltransferase GT17 AT1G68470:AT1G68470:Exostosin family protein 2Chr20:474697–477611 (+)6.326e-13
Glyma.04G018000 hypothetical protein AT5G42310:AT5G42310:Pentatricopeptide repeat (PPR-like) superfamily protein 1Chr04:1402993–1407323 (-)4.446e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)6.198e-12
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)5.025e-12
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)4.537e-13
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)9.687e-13
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)9.687e-13
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)4.348e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)8.133e-13
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)8.132e-13
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)8.133e-13
Glyma.07G040200 hypothetical protein NA 1Chr07:3324393–3329481 (-)5.058e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)7.198e-11
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)2.434e-11
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)2.434e-11
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)2.434e-11
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)2.434e-11
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)2.434e-11
Glyma.11G106400 CYP41 peptidyl-prolyl cis-trans isomerase CYP41 AT4G34960:AT4G34960:Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 1Chr11:8108697–8114349 (+)4.308e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)4.065e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)4.065e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)7.744e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)7.743e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)8.243e-12
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)8.243e-12
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)8.243e-12
Glyma.14G204400 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr14:46936057–46943868 (-)5.123e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)9.595e-14
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.283e-13
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)9.594e-14
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)9.595e-14
Glyma.17G251800 hypothetical protein NA 1Chr17:40633579–40636068 (+)5.683e-11
Glyma.17G251900 hypothetical protein AT1G19600:AT1G19600:pfkB-like carbohydrate kinase family protein 1Chr17:40641019–40644794 (+)5.683e-11
Glyma.18G099600 hypothetical protein AT4G27040:VPS22:EAP30/Vps36 family protein 1Chr18:10453308–10458891 (-)1.11e-12
Glyma.18G099700 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr18:10459970–10464888 (-)1.557e-12
Glyma.18G099900 hypothetical protein AT1G47578:AT1G47578:Biotin/lipoate A/B protein ligase family__AT4G31050:AT4G31050:Biotin/lipoate A/B protein ligase fam… 1Chr18:10471443–10475076 (+)1.11e-12
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)7.236e-11