Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P46203

Metabolite ID
P46203
Deionized mass
336.0994 Da
Average m/z
337.1082
Average RT
23.8109
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
57
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

57 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)3.417e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)3.417e-11
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 2Chr14:5675792–5680343 (+)2.951e-12
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.74e-11
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)2.033e-11
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)2.666e-11
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1134716–1143232 (+)6.301e-12
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)4.366e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)4.366e-11
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)7.069e-11
Glyma.03G016700 hypothetical protein AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr03:1683395–1688893 (-)1.268e-11
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)4.308e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)1.162e-12
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)3.083e-13
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)7.245e-12
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)4.82e-13
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)8.523e-12
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)6.11e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)4.281e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)6.599e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.235e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)5.864e-11
Glyma.07G087700 hypothetical protein AT3G24495:MSH7:MUTS homolog 7 1Chr07:8111751–8121053 (+)2.192e-11
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)2.224e-13
Glyma.07G095400 hypothetical protein NA 1Chr07:8914725–8920132 (+)5.422e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)7.739e-11
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)6.171e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)3.529e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)3.529e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)9.08e-13
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)9.08e-13
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)6.211e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)3.417e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)3.417e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)3.71e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)7.76e-12
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)5.056e-11
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)1.198e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)1.042e-12
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.035e-14
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 1Chr14:6037810–6041899 (+)6.499e-11
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)6.499e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)2.107e-12
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)2.033e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)2.666e-11
Glyma.14G211800 hypothetical protein AT1G66080:AT1G66080:hikeshi-like protein 1Chr14:47664851–47670630 (+)1.222e-11
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)5.878e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.27e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)8.465e-12
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)2.415e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)2.415e-11
Glyma.17G251200 hypothetical protein NA 1Chr17:40605249–40607536 (+)9.46e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)1.268e-11
Glyma.18G230600 hypothetical protein AT3G61250:MYB17:myb domain protein 17 1Chr18:51934101–51937216 (-)5.318e-11
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)7.299e-12
Glyma.18G231300 hypothetical protein AT3G61310:AT3G61310:AT hook motif DNA-binding family protein 1Chr18:51979095–51987062 (-)8.635e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)1.772e-12