Overview Annotation GWAS Evidence Associated genes

P46016

Metabolite ID
P46016
Deionized mass
238.1723 Da
Average m/z
239.1780
Average RT
23.6965
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
157
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

157 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 4Chr13:31727841–31735910 (-)6.396e-14
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)4.206e-12
Glyma.06G313500 hypothetical protein NA 3Chr06:50191600–50203098 (-)4.048e-15
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)3.274e-13
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)6.209e-16
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)2.346e-12
Glyma.16G196900 hypothetical protein NA 3Chr16:35841279–35846894 (-)5.456e-11
Glyma.16G209300 hypothetical protein NA 3Chr16:36856833–36863994 (-)1.319e-12
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)6.56e-11
Glyma.01G166400 hypothetical protein AT4G36080:AT4G36080:phosphotransferases/inositol or phosphatidylinositol kinase 2Chr01:50404781–50436297 (-)9.516e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 2Chr05:41274513–41279615 (-)2.513e-22
Glyma.06G209300 hypothetical protein NA 2Chr06:20573671–20581076 (-)1.037e-12
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 2Chr06:50401945–50408153 (+)9.028e-15
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)2.475e-13
Glyma.09G018700 hypothetical protein NA 2Chr09:1470411–1472672 (-)3.268e-12
Glyma.09G057000 hypothetical protein NA 2Chr09:5140625–5145658 (+)2.051e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)7.774e-13
Glyma.13G200600 hypothetical protein AT1G64830:AT1G64830:Eukaryotic aspartyl protease family protein 2Chr13:31428112–31429431 (-)2.281e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 2Chr13:31720004–31725252 (+)2.351e-13
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)6.21e-14
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)2.12e-16
Glyma.16G118200 hypothetical protein NA 2Chr16:26337169–26338323 (+)2.346e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)4.206e-12
Glyma.20G120200 hypothetical protein NA 2Chr20:36268998–36282456 (-)5.005e-12
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)6.736e-11
Glyma.01G153300 hypothetical protein AT5G45340:CYP707A3:cytochrome P450, family 707, subfamily A, polypeptide 3__AT4G19230:CYP707A1:cytochrome P450, family … 1Chr01:49049375–49052359 (-)3.758e-11
Glyma.01G166300 hypothetical protein AT3G51230:AT3G51230:chalcone-flavanone isomerase family protein 1Chr01:50402188–50404181 (+)9.516e-11
Glyma.01G166600 hypothetical protein AT2G18000:TAF14:TBP-associated factor 14 1Chr01:50443699–50446896 (-)9.516e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)4.935e-15
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)4.935e-15
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)5.228e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)8.174e-15
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)3.817e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)1.648e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)6.173e-17
Glyma.03G031700 hypothetical protein AT1G79600:AT1G79600:Protein kinase superfamily protein 1Chr03:3567906–3572939 (-)6.454e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)1.66e-11
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)2.96e-11
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 1Chr04:7187985–7192897 (+)3.696e-13
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)6.29e-13
Glyma.04G220400 hypothetical protein AT5G10020:AT5G10020:Leucine-rich receptor-like protein kinase family protein 1Chr04:49102263–49108229 (+)2.998e-11
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)9.11e-13
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)3.545e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)4.477e-11
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)1.804e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.53e-19
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)4.185e-15
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)5.067e-11
Glyma.06G207900 hypothetical protein NA 1Chr06:20278974–20282107 (-)4.957e-12
Glyma.06G208000 hypothetical protein AT1G74000:SS3:strictosidine synthase 3 1Chr06:20286288–20288769 (+)4.957e-12
Glyma.06G208900 hypothetical protein NA 1Chr06:20515068–20521900 (-)4.957e-12
Glyma.06G209400 hypothetical protein NA 1Chr06:20622369–20629712 (+)4.957e-12
Glyma.06G209600 hypothetical protein AT1G48960:AT1G48960:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:20638577–20641470 (+)4.957e-12
Glyma.06G210000 hypothetical protein NA 1Chr06:20706632–20708144 (-)4.957e-12
Glyma.06G210100 hypothetical protein NA 1Chr06:20725481–20728890 (-)4.957e-12
Glyma.06G210400 hypothetical protein AT1G03280:AT1G03280:Transcription factor TFIIE, alpha subunit 1Chr06:20768340–20778709 (-)4.957e-12
Glyma.06G210900 hypothetical protein AT3G24330:AT3G24330:O-Glycosyl hydrolases family 17 protein 1Chr06:20942818–20945744 (+)4.957e-12
Glyma.06G211500 hypothetical protein AT5G19950:AT5G19950:tudor domain protein (DUF1767) 1Chr06:21104409–21114116 (-)4.957e-12
Glyma.06G211700 hypothetical protein NA 1Chr06:21226061–21226529 (-)2.846e-11
Glyma.06G211800 hypothetical protein NA 1Chr06:21237649–21239875 (+)2.846e-11
Glyma.06G213600 hypothetical protein NA 1Chr06:21713618–21726865 (+)2.846e-11
Glyma.06G313600 hypothetical protein AT5G13750:ZIFL1:zinc induced facilitator-like 1 1Chr06:50219160–50226659 (-)4.02e-12
Glyma.06G316500 hypothetical protein AT2G47420:DIM1A:Ribosomal RNA adenine dimethylase family protein 1Chr06:50531222–50538652 (-)5.375e-13
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)5.162e-14
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)9.664e-13
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)5.729e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)2.475e-13
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)2.475e-13
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)2.475e-13
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)2.475e-13
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)1.592e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)3.492e-13
Glyma.09G056900 hypothetical protein NA 1Chr09:5128829–5132737 (+)2.051e-11
Glyma.09G057300 hypothetical protein AT5G57330:AT5G57330:Galactose mutarotase-like superfamily protein 1Chr09:5164998–5171598 (-)8.594e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)9.127e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)8.399e-15
Glyma.09G110000 hypothetical protein NA 1Chr09:21593730–21602127 (+)3.015e-13
Glyma.09G250000 hypothetical protein NA 1Chr09:47096937–47099390 (-)1.87e-11
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)8.162e-12
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)8.162e-12
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)3.908e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.407e-13
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.407e-13
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.407e-13
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.407e-13
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.149e-13
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)2.168e-15
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)1.843e-11
Glyma.11G048600 hypothetical protein AT5G67470:FH6:formin homolog 6 1Chr11:3634128–3639401 (-)9.663e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)2.634e-11
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)2.365e-12
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)2.365e-12
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)2.365e-12
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)2.365e-12
Glyma.11G090300 hypothetical protein AT4G19190:AT4G19190:zinc knuckle (CCHC-type) family protein 1Chr11:6849007–6855564 (+)3.606e-12
Glyma.11G179000 hypothetical protein AT2G27230:LHW:transcription factor-like protein 1Chr11:24412040–24417199 (+)4.999e-13
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)7.385e-14
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)7.385e-14
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.449e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.449e-11
Glyma.12G198700 hypothetical protein AT5G62990:emb1692:Ubiquitin carboxyl-terminal hydrolase family protein 1Chr12:36001658–36004086 (+)2.139e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)6.802e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)6.802e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)7.774e-13
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)1.517e-11
Glyma.13G081100 hypothetical protein NA 1Chr13:18881427–18886462 (-)9.352e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)5.209e-14
Glyma.13G200800 hypothetical protein AT2G21510:AT2G21510:DNAJ heat shock N-terminal domain-containing protein 1Chr13:31438634–31445721 (+)6.27e-12
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)1.823e-12
Glyma.13G203600 hypothetical protein AT5G13490:AAC2:ADP/ATP carrier 2 1Chr13:31753843–31756013 (-)3.131e-13
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)2.351e-13
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)2.971e-14
Glyma.13G237900 hypothetical protein NA 1Chr13:34809361–34816888 (-)9.177e-14
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)7.496e-11
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)3.2e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)2.708e-12
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.49e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)9.834e-11
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)9.148e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)9.149e-11
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)5.231e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.245e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)7.077e-15
Glyma.15G150300 hypothetical protein AT5G49130:AT5G49130:MATE efflux family protein 1Chr15:12416065–12418420 (-)5.618e-11
Glyma.15G150400 hypothetical protein AT3G06840:AT3G06840:uncharacterized protein 1Chr15:12436393–12437800 (-)4.59e-11
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)7.78e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)3.274e-13
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)3.274e-13
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)3.274e-13
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)3.274e-13
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)4.284e-12
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)2.009e-12
Glyma.16G117300 hypothetical protein NA 1Chr16:26226934–26227350 (+)9.556e-11
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)3.167e-12
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)2.346e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)4.554e-13
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)2.869e-16
Glyma.16G146700 hypothetical protein NA 1Chr16:30755899–30759360 (-)9.609e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)8.361e-12
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)8.614e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)7.659e-12
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)4.434e-14
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)4.434e-14
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)6.56e-11
Glyma.18G044900 hypothetical protein AT1G66120:AAE11:AMP-dependent synthetase and ligase family protein__AT1G68270:AT1G68270:AMP-dependent synthetase and li… 1Chr18:3881382–3884162 (+)9.383e-12
Glyma.18G045700 hypothetical protein NA 1Chr18:3956176–3958846 (+)1.666e-11
Glyma.18G055400 hypothetical protein NA 1Chr18:4824726–4828902 (+)9.164e-12
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)1.1e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)5.338e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)2.734e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)3.473e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)3.473e-12
Glyma.19G097300 hypothetical protein AT3G26890:AT3G26890:meiosis chromosome segregation family protein 1Chr19:34177996–34184886 (-)8.412e-11
Glyma.19G102000 ICE2 AT3G26744:ICE1:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr19:34998146–35001862 (+)6.928e-11
Glyma.19G102200 hypothetical protein AT2G31410:AT2G31410:coiled-coil protein 1Chr19:35024582–35025690 (+)6.928e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)1.584e-15
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)2.401e-12