Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P45759

Metabolite ID
P45759
Deionized mass
517.3287 Da
Average m/z
518.3339
Average RT
23.5440
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
76
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

76 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 6Chr16:30652378–30659548 (+)6.755e-16
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)1.541e-16
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)5.46e-12
Glyma.02G188300 hypothetical protein NA 2Chr02:35008552–35027979 (-)4.216e-11
Glyma.16G139000 hypothetical protein NA 2Chr16:29623540–29631451 (+)1.323e-15
Glyma.02G193800 hypothetical protein AT5G06470:AT5G06470:Glutaredoxin family protein 1Chr02:36706657–36712744 (-)1.236e-11
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)1.392e-14
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)8.691e-15
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.983e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)3.479e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)9.956e-13
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)8.906e-11
Glyma.04G190200 hypothetical protein AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 1Chr04:46086785–46089618 (-)6.983e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)8.356e-13
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)4.148e-12
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)1.211e-13
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)1.211e-13
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)1.211e-13
Glyma.06G305200 hypothetical protein AT3G21690:AT3G21690:MATE efflux family protein 1Chr06:49420013–49426780 (-)1.774e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)1.541e-16
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)1.541e-16
Glyma.07G040200 hypothetical protein NA 1Chr07:3324393–3329481 (-)2.004e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.655e-15
Glyma.09G018600 hypothetical protein NA 1Chr09:1460075–1465805 (-)1.977e-11
Glyma.09G018700 hypothetical protein NA 1Chr09:1470411–1472672 (-)1.057e-11
Glyma.09G019800 VAMP721D vesicle-associated membrane protein 721d NA 1Chr09:1540660–1547761 (+)2.933e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)9.421e-12
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.08e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.08e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.08e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.08e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)4.234e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)2.265e-13
Glyma.11G125600 hypothetical protein AT2G46200:AT2G46200:U11/U12 small nuclear ribonucleoprotein 1Chr11:9540747–9545520 (-)1.133e-12
Glyma.11G182600 hypothetical protein AT5G22400:AT5G22400:Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein 1Chr11:24998933–25003549 (-)4.297e-11
Glyma.11G182700 hypothetical protein AT1G32250:AT1G32250:Calcium-binding EF-hand family protein 1Chr11:25028353–25031056 (-)3.799e-11
Glyma.12G008300 hypothetical protein AT3G21640:TWD1:FKBP-type peptidyl-prolyl cis-trans isomerase family protein 1Chr12:613939–617457 (+)2.482e-13
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)6.795e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)6.795e-12
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)6.598e-14
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)7.736e-11
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)7.586e-13
Glyma.14G077100 hypothetical protein AT5G42610:AT5G42610:calcium uniporter (DUF607) 1Chr14:6486139–6488935 (+)4.575e-11
Glyma.14G077200 hypothetical protein AT5G42620:AT5G42620:metalloendopeptidase / zinc ion binding protein 1Chr14:6498564–6506068 (+)4.575e-11
Glyma.14G077300 hypothetical protein AT1G75040:PR5:pathosis-related protein 5 1Chr14:6508609–6520744 (-)4.574e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.684e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.727e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.684e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.684e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)7.236e-14
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)3.563e-12
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)2.486e-11
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)4.668e-15
Glyma.16G138500 hypothetical protein NA 1Chr16:29564872–29566190 (+)1.625e-11
Glyma.16G139100 hypothetical protein NA 1Chr16:29632332–29634248 (-)7.034e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)3.986e-22
Glyma.16G142300 hypothetical protein AT4G36850:AT4G36850:PQ-loop repeat family protein / transmembrane family protein 1Chr16:30086178–30091466 (-)4.889e-11
Glyma.16G143400 hypothetical protein NA 1Chr16:30337469–30338390 (-)3.666e-12
Glyma.16G144100 hypothetical protein NA 1Chr16:30432951–30434052 (-)9.311e-12
Glyma.16G144700 hypothetical protein AT5G66960:AT5G66960:Prolyl oligopeptidase family protein 1Chr16:30514629–30519598 (+)3.519e-13
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)2.581e-15
Glyma.16G145500 hypothetical protein AT2G39200:MLO12:Seven transmembrane MLO family protein 1Chr16:30630177–30636253 (+)8.142e-11
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)5.948e-13
Glyma.16G147400 hypothetical protein NA 1Chr16:30817535–30821568 (+)8.38e-11
Glyma.16G160900 hypothetical protein NA 1Chr16:32013447–32016235 (+)1.323e-11
Glyma.16G161500 hypothetical protein NA 1Chr16:32076715–32092322 (-)8.14e-11
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)9.672e-11
Glyma.18G242900 hypothetical protein NA 1Chr18:53113341–53119592 (-)4.142e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)5.948e-12
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)2.471e-11
Glyma.19G125300 hypothetical protein AT3G56880:AT3G56880:VQ motif-containing protein__AT2G41010:CAMBP25:calmodulin (CAM)-binding protein of 25 kDa 1Chr19:38346007–38347425 (-)1.244e-11
Glyma.19G125400 hypothetical protein AT3G12390:AT3G12390:Nascent polypeptide-associated complex (NAC), alpha subunit family protein 1Chr19:38371477–38374357 (-)1.244e-11
Glyma.19G125800 hypothetical protein AT2G40840:DPE2:disproportionating enzyme 2 1Chr19:38410642–38423531 (+)1.244e-11
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)2.226e-14
Glyma.19G248000 hypothetical protein AT3G04470:AT3G04470:Ankyrin repeat family protein 1Chr19:49394278–49398822 (-)8.05e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)9.032e-11