Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P45642

Metabolite ID
P45642
Deionized mass
550.2416 Da
Average m/z
551.2531
Average RT
23.4802
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
44
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

44 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)2.423e-11
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)3.27e-14
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)3.03e-14
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)1.911e-14
Glyma.16G146700 hypothetical protein NA 2Chr16:30755899–30759360 (-)1.615e-12
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)2.013e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)8.047e-14
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.599e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.106e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)9.114e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)9.114e-12
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)9.519e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)3.334e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)9.519e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)9.519e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)3.334e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)7.128e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.134e-11
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)3.57e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)4.683e-12
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)4.683e-12
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)4.683e-12
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)1.575e-13
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 1Chr12:36406747–36413696 (+)1.347e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.711e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)1.711e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.911e-14
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)9.869e-13
Glyma.14G202400 hypothetical protein AT1G21480:AT1G21480:Exostosin family protein 1Chr14:46768802–46772377 (+)2.113e-11
Glyma.14G202500 hypothetical protein NA 1Chr14:46773824–46775761 (+)2.113e-11
Glyma.14G204400 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr14:46936057–46943868 (-)7.222e-13
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.685e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.107e-12
Glyma.15G141100 hypothetical protein NA 1Chr15:11554310–11555089 (+)3.998e-12
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)2.423e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)2.423e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)2.423e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)2.423e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.562e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)8.765e-13
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)3.754e-13
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)1.615e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)3.707e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)3.707e-12