Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P45564

Metabolite ID
P45564
Deionized mass
571.8545 Da
Average m/z
572.8615
Average RT
23.4269
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
99
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

99 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)1.127e-13
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)2.21e-12
Glyma.09G053800 hypothetical protein NA 3Chr09:4737413–4755632 (-)9.002e-12
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)2.431e-13
Glyma.05G034000 hypothetical protein AT4G03400:DFL2:Auxin-responsive GH3 family protein 2Chr05:2965889–2971412 (-)3.412e-14
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 2Chr12:36267599–36271584 (+)6.17e-19
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 2Chr12:36289704–36295084 (-)2.599e-20
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)1.298e-15
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)2.47e-13
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)4.126e-14
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)4.126e-14
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)1.542e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)5.3e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)4.439e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)4.439e-12
Glyma.02G044600 hypothetical protein NA 1Chr02:4131829–4134877 (+)7.642e-11
Glyma.03G019700 hypothetical protein AT3G61130:GAUT1:galacturonosyltransferase 1 1Chr03:2010835–2018418 (+)3.758e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.855e-11
Glyma.03G119400 hypothetical protein AT5G43280:DCI1:delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 1Chr03:33050663–33053094 (+)6.76e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)4.742e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)8.104e-11
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)7.254e-11
Glyma.05G156400 hypothetical protein AT4G38500:AT4G38500:Sept9 (DUF616) 1Chr05:34887406–34892486 (+)5.89e-11
Glyma.05G156500 hypothetical protein NA 1Chr05:34893768–34898039 (-)5.89e-11
Glyma.06G079300 hypothetical protein NA 1Chr06:6100180–6100899 (-)9.426e-11
Glyma.06G081600 hypothetical protein AT5G11490:AT5G11490:adaptin family protein 1Chr06:6273644–6283819 (+)2.3e-11
Glyma.06G084200 hypothetical protein NA 1Chr06:6479142–6484077 (+)9.975e-11
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)8.407e-15
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)8.407e-15
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)8.407e-15
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)2.449e-14
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)1.498e-14
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)1.498e-14
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)1.498e-14
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)4.927e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)4.927e-11
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)5.228e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)2.21e-12
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)2.21e-12
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)1.469e-11
Glyma.07G078300 hypothetical protein NA 1Chr07:7150800–7154478 (-)4.554e-11
Glyma.07G100400 hypothetical protein AT3G18050:AT3G18050:GPI-anchored protein 1Chr07:9523110–9526319 (+)3.458e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)1.043e-11
Glyma.08G182000 hypothetical protein NA 1Chr08:14601875–14604750 (+)6.859e-11
Glyma.08G239500 hypothetical protein AT4G09180:FBH2:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr08:20444715–20447665 (-)2.103e-11
Glyma.09G052900 hypothetical protein NA 1Chr09:4652312–4653046 (+)4.423e-11
Glyma.09G054100 hypothetical protein NA 1Chr09:4780506–4788669 (-)4.423e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)1.68e-13
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)7.001e-12
Glyma.09G270200 hypothetical protein AT5G01020:AT5G01020:Protein kinase superfamily protein 1Chr09:48725417–48728520 (-)4.353e-11
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)5.075e-12
Glyma.11G094700 hypothetical protein AT5G08280:HEMC:hydroxymethylbilane synthase 1Chr11:7190632–7195838 (-)1.525e-12
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)6.069e-11
Glyma.11G119600 hypothetical protein AT2G16130:PMT2:polyol/monosaccharide transporter 2 1Chr11:9127497–9129972 (-)4.513e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)5.064e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)5.064e-12
Glyma.12G186200 hypothetical protein AT3G44350:NAC061:NAC domain containing protein 61 1Chr12:34708678–34710549 (+)9.781e-11
Glyma.12G198700 hypothetical protein AT5G62990:emb1692:Ubiquitin carboxyl-terminal hydrolase family protein 1Chr12:36001658–36004086 (+)1.452e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)6.17e-19
Glyma.12G202500 hypothetical protein AT1G03600:PSB27:photosystem II family protein 1Chr12:36301835–36304669 (+)5.21e-11
Glyma.12G202700 hypothetical protein AT2G20875:EPF1:epidermal patterning factor 1 1Chr12:36329374–36330905 (-)1.044e-13
Glyma.12G203100 hypothetical protein NA 1Chr12:36353913–36356238 (+)6.111e-11
Glyma.12G203300 hypothetical protein AT4G03430:EMB2770:pre-mRNA splicing factor-like protein 1Chr12:36371465–36377700 (-)1.913e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)2.886e-17
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)2.47e-13
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)2.219e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)2.431e-13
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)2.978e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)4.893e-13
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)4.893e-13
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)4.126e-14
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)3.418e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)3.418e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.341e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)6.767e-13
Glyma.15G216500 hypothetical protein NA 1Chr15:35612259–35624014 (+)2.267e-12
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)3.904e-11
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)2.223e-11
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)7.811e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)4.113e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)3.765e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)9.369e-12
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)9.361e-12
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)5.036e-13
Glyma.16G180000 hypothetical protein NA 1Chr16:34064572–34069421 (+)8.646e-12
Glyma.16G180100 hypothetical protein NA 1Chr16:34070806–34076053 (+)8.646e-12
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)1.529e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)8.92e-12
Glyma.16G196900 hypothetical protein NA 1Chr16:35841279–35846894 (-)7.649e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)1.807e-12
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)1.807e-12
Glyma.17G008200 hypothetical protein NA 1Chr17:685577–688365 (+)4.133e-11
Glyma.17G092800 hypothetical protein NA 1Chr17:7253511–7255621 (-)1.218e-14
Glyma.18G248200 hypothetical protein AT2G44710:AT2G44710:RNA-binding (RRM/RBD/RNP motifs) family protein 1Chr18:53518644–53525249 (-)2.942e-11
Glyma.18G248300 hypothetical protein AT1G16340:ATKDSA2:Aldolase superfamily protein 1Chr18:53526586–53534541 (-)6.061e-11
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)2.443e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)1.298e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)5.339e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)5.339e-11