Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P45533

Metabolite ID
P45533
Deionized mass
640.2669 Da
Average m/z
641.2748
Average RT
23.4018
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
52
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

52 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G313500 hypothetical protein NA 3Chr06:50191600–50203098 (-)4.795e-14
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)9.121e-12
Glyma.16G196900 hypothetical protein NA 3Chr16:35841279–35846894 (-)7.34e-12
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 2Chr06:50401945–50408153 (+)3.339e-13
Glyma.09G018700 hypothetical protein NA 2Chr09:1470411–1472672 (-)7.019e-12
Glyma.01G031900 hypothetical protein AT1G23870:TPS9:trehalose-phosphatase/synthase 9 1Chr01:3342396–3347771 (+)1.327e-11
Glyma.01G119600 SLE3 AT2G40170:GEA6:Stress induced protein 1Chr01:41172520–41174209 (-)8.17e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)8.95e-11
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)1.683e-11
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)1.105e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)9.77e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)9.77e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)4.685e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)4.501e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.239e-20
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.674e-20
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.235e-15
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)8.982e-11
Glyma.06G316500 hypothetical protein AT2G47420:DIM1A:Ribosomal RNA adenine dimethylase family protein 1Chr06:50531222–50538652 (-)7.186e-12
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)1.658e-12
Glyma.09G018600 hypothetical protein NA 1Chr09:1460075–1465805 (-)3.529e-11
Glyma.09G019300 hypothetical protein AT1G52520:FRS6:FAR1-related sequence 6 1Chr09:1514278–1517148 (+)8.33e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)2.77e-12
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)2.982e-14
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)2.982e-14
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)2.982e-14
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)2.982e-14
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.482e-14
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)4.734e-16
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)2.383e-11
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)2.383e-11
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)2.383e-11
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)2.383e-11
Glyma.11G179000 hypothetical protein AT2G27230:LHW:transcription factor-like protein 1Chr11:24412040–24417199 (+)2.886e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)9.121e-12
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)9.257e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.109e-11
Glyma.16G003000 hypothetical protein AT1G58025:AT1G58025:DNA-binding bromodomain-containing protein 1Chr16:164584–168767 (+)9.763e-11
Glyma.16G003200 hypothetical protein NA 1Chr16:172940–178668 (-)9.763e-11
Glyma.16G003600 hypothetical protein AT5G49945:AT5G49945: 1Chr16:198072–202486 (-)4.771e-11
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)6.608e-11
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)6.226e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)2.805e-12
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)6.401e-11
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr16:35831912–35835153 (+)6.454e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)2.12e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)3.665e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)3.665e-12
Glyma.19G102000 ICE2 AT3G26744:ICE1:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr19:34998146–35001862 (+)1.63e-11
Glyma.19G102200 hypothetical protein AT2G31410:AT2G31410:coiled-coil protein 1Chr19:35024582–35025690 (+)1.63e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)3.129e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)9.363e-12