Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P45485

Metabolite ID
P45485
Deionized mass
584.3203 Da
Average m/z
585.3301
Average RT
23.3742
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
64
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

64 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 3Chr18:47102746–47129707 (+)2.041e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)3.356e-13
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1134716–1143232 (+)8.862e-11
Glyma.01G019000 hypothetical protein AT5G46800:BOU:Mitochondrial substrate carrier family protein 1Chr01:1818232–1821908 (-)3.98e-11
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)4.79e-12
Glyma.01G119600 SLE3 AT2G40170:GEA6:Stress induced protein 1Chr01:41172520–41174209 (-)8.272e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)7.016e-13
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)1.86e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)1.891e-11
Glyma.05G191600 hypothetical protein AT2G13680:CALS5:callose synthase 5 1Chr05:37711639–37726572 (-)1.712e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.889e-12
Glyma.06G184100 hypothetical protein NA 1Chr06:15897746–15902462 (+)2.93e-11
Glyma.08G338900 hypothetical protein NA 1Chr08:45536950–45543029 (-)6.411e-11
Glyma.09G186700 hypothetical protein AT1G20050:HYD1:C-8,7 sterol isomerase 1Chr09:41147591–41150204 (+)5.26e-11
Glyma.09G209900 hypothetical protein AT1G31930:XLG3:extra-large GTP-binding protein 3 1Chr09:43412726–43419532 (+)1.053e-11
Glyma.09G252100 hypothetical protein AT1G79790:FHY1:Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 1Chr09:47245185–47248478 (+)7.385e-12
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)2.321e-12
Glyma.09G272300 hypothetical protein AT5G01950:AT5G01950:Leucine-rich repeat protein kinase family protein 1Chr09:48873276–48883421 (-)3.962e-11
Glyma.09G272800 hypothetical protein AT3G08670:AT3G08670:serine/arginine repetitive matrix-like protein 1Chr09:48916725–48921396 (+)3.962e-11
Glyma.09G280300 hypothetical protein AT2G38480:AT2G38480:Uncharacterized protein family (UPF0497) 1Chr09:49547489–49550731 (-)7.7e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)2.429e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)2.429e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)2.429e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)2.429e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)9.411e-13
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.64e-11
Glyma.10G238200 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr10:46680865–46684088 (+)7.086e-11
Glyma.11G061800 hypothetical protein NA 1Chr11:4632831–4633552 (+)5.755e-13
Glyma.11G062400 hypothetical protein AT4G36860:AT4G36860:LIM domain-containing protein 1Chr11:4720040–4726569 (+)1.941e-12
Glyma.11G125600 hypothetical protein AT2G46200:AT2G46200:U11/U12 small nuclear ribonucleoprotein 1Chr11:9540747–9545520 (-)2.239e-14
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)3.512e-12
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)3.512e-12
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)3.512e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)2.496e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.496e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)5.702e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)2.811e-13
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 1Chr12:36406747–36413696 (+)4.136e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)2.022e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)2.022e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)1.166e-11
Glyma.14G204400 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr14:46936057–46943868 (-)1.269e-11
Glyma.15G047100 hypothetical protein AT1G71240:AT1G71240:chromosome-partitioning protein, putative (DUF639) 1Chr15:3736217–3746037 (+)9.994e-11
Glyma.15G047800 hypothetical protein AT1G33270:AT1G33270:Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein 1Chr15:3777567–3783739 (+)9.994e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.348e-12
Glyma.16G019400 SHAT1-5 NAC domain-containing protein 43-like NA 1Chr16:1725643–1728272 (+)3.85e-12
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)6.823e-14
Glyma.16G020500 hypothetical protein AT4G00870:AT4G00870:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr16:1877938–1879947 (-)4.175e-13
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)8.227e-11
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)9.428e-12
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)1.896e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)1.387e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)1.321e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)4.117e-11
Glyma.16G219700 hypothetical protein NA 1Chr16:37690133–37695529 (-)2.455e-11
Glyma.18G194900 hypothetical protein NA 1Chr18:46855096–46855729 (+)8.367e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)1.597e-12
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)1.987e-11
Glyma.18G267200 hypothetical protein NA 1Chr18:55161119–55166101 (-)3.921e-11
Glyma.18G267300 hypothetical protein NA 1Chr18:55166980–55168397 (+)8.146e-11
Glyma.18G267500 hypothetical protein NA 1Chr18:55179516–55181798 (-)1.983e-15
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)5.211e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.933e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.933e-12