Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P45452

Metabolite ID
P45452
Deionized mass
457.3019 Da
Average m/z
458.3070
Average RT
23.3646
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
42
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

42 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.17G217900 hypothetical protein NA 3Chr17:36771760–36778616 (-)4.188e-11
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)3.952e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)8.156e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)8.156e-12
Glyma.15G258300 hypothetical protein NA 2Chr15:48899412–48908116 (-)8.12e-11
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 2Chr18:47102746–47129707 (+)3.938e-12
Glyma.01G117000 hypothetical protein NA 1Chr01:40366281–40370122 (+)2.717e-12
Glyma.01G117200 hypothetical protein NA 1Chr01:40497525–40501709 (-)2.717e-12
Glyma.01G119600 SLE3 AT2G40170:GEA6:Stress induced protein 1Chr01:41172520–41174209 (-)2.879e-11
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)5.115e-12
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)3.946e-12
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)1.694e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)1.694e-11
Glyma.02G107400 hypothetical protein NA 1Chr02:10245905–10246706 (-)3.459e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)8.864e-12
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)2.61e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.775e-11
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.949e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)6.864e-12
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)1.27e-13
Glyma.10G005300 hypothetical protein AT5G46050:PTR3:peptide transporter 3 1Chr10:535249–541722 (+)2.313e-11
Glyma.10G005400 hypothetical protein AT5G46040:AT5G46040:Major facilitator superfamily protein 1Chr10:545269–550554 (+)2.313e-11
Glyma.10G006000 hypothetical protein NA 1Chr10:596042–600044 (-)2.313e-11
Glyma.10G006500 hypothetical protein AT5G43330:c-NAD-MDH2:Lactate/malate dehydrogenase family protein 1Chr10:633423–637181 (+)2.313e-11
Glyma.11G018000 hypothetical protein AT4G11040:AT4G11040:Protein phosphatase 2C family protein 1Chr11:1246178–1247949 (+)2.444e-11
Glyma.12G001400 hypothetical protein AT1G72090:AT1G72090:Methylthiotransferase 1Chr12:113763–118480 (+)3.852e-11
Glyma.12G001600 PM27 seed maturation protein PM27 AT1G22600:AT1G22600:Late embryosis abundant protein (LEA) family protein__AT1G72100:AT1G72100:late embryosis abundant d… 1Chr12:127545–128932 (+)3.852e-11
Glyma.12G001700 hypothetical protein AT1G22570:AT1G22570:Major facilitator superfamily protein__AT1G22550:AT1G22550:Major facilitator superfamily protein 1Chr12:132389–134935 (+)3.852e-11
Glyma.12G015800 hypothetical protein NA 1Chr12:1126280–1132370 (-)4.734e-11
Glyma.13G133800 hypothetical protein AT3G53520:UXS1:UDP-glucuronic acid decarboxylase 1 1Chr13:24601574–24606756 (-)7.011e-11
Glyma.13G133900 hypothetical protein NA 1Chr13:24613843–24616128 (+)7.011e-11
Glyma.13G134000 hypothetical protein NA 1Chr13:24618272–24619048 (-)7.011e-11
Glyma.13G135100 hypothetical protein AT5G02750:SGR9:RING/U-box superfamily protein 1Chr13:24744740–24746437 (+)4.997e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)2.449e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)2.449e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)8.156e-12
Glyma.13G142200 hypothetical protein AT1G33410:SAR1:SUPPRESSOR OF AUXIN RESISTANCE1 1Chr13:25483702–25502265 (+)1.866e-14
Glyma.13G142500 hypothetical protein NA 1Chr13:25548232–25550097 (+)3.065e-12
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)3.423e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)3.906e-11
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)3.952e-11
Glyma.18G195000 hypothetical protein NA 1Chr18:46858462–46861415 (+)3.765e-11