Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P45410

Metabolite ID
P45410
Deionized mass
463.2843 Da
Average m/z
464.2960
Average RT
23.3529
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
62
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

62 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.17G217900 hypothetical protein NA 3Chr17:36771760–36778616 (-)5.859e-11
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)3.687e-12
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)1.135e-13
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)3.978e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)3.654e-16
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)3.653e-16
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 2Chr18:47102746–47129707 (+)6.304e-12
Glyma.01G117000 hypothetical protein NA 1Chr01:40366281–40370122 (+)8.589e-12
Glyma.01G117200 hypothetical protein NA 1Chr01:40497525–40501709 (-)8.589e-12
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)7.272e-13
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)2.788e-11
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)3.285e-12
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)2.367e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)1.968e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)1.968e-12
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)3.727e-13
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)9.388e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)9.478e-12
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)6.611e-11
Glyma.05G149300 hypothetical protein AT2G03870:EMB2816:Small nuclear ribonucleoprotein family protein 1Chr05:34357418–34361032 (-)3.867e-11
Glyma.05G149900 hypothetical protein NA 1Chr05:34389242–34393621 (-)3.867e-11
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)2.116e-13
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)9.322e-11
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)9.166e-12
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)3.282e-13
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)7.112e-13
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)3.978e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)3.978e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)3.978e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)3.978e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)4.735e-13
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)2.464e-11
Glyma.09G065900 hypothetical protein NA 1Chr09:6419980–6421918 (+)4.943e-11
Glyma.09G066000 hypothetical protein NA 1Chr09:6431656–6439981 (-)4.943e-11
Glyma.09G066200 hypothetical protein AT5G57030:LUT2:Lycopene beta/epsilon cyclase protein 1Chr09:6475361–6486120 (+)4.943e-11
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)7.169e-11
Glyma.12G001400 hypothetical protein AT1G72090:AT1G72090:Methylthiotransferase 1Chr12:113763–118480 (+)1.982e-11
Glyma.12G001600 PM27 seed maturation protein PM27 AT1G22600:AT1G22600:Late embryosis abundant protein (LEA) family protein__AT1G72100:AT1G72100:late embryosis abundant d… 1Chr12:127545–128932 (+)1.982e-11
Glyma.12G001700 hypothetical protein AT1G22570:AT1G22570:Major facilitator superfamily protein__AT1G22550:AT1G22550:Major facilitator superfamily protein 1Chr12:132389–134935 (+)1.982e-11
Glyma.12G015800 hypothetical protein NA 1Chr12:1126280–1132370 (-)1.328e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)2.829e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)2.829e-11
Glyma.13G133800 hypothetical protein AT3G53520:UXS1:UDP-glucuronic acid decarboxylase 1 1Chr13:24601574–24606756 (-)6.26e-11
Glyma.13G133900 hypothetical protein NA 1Chr13:24613843–24616128 (+)6.26e-11
Glyma.13G134000 hypothetical protein NA 1Chr13:24618272–24619048 (-)6.258e-11
Glyma.13G135100 hypothetical protein AT5G02750:SGR9:RING/U-box superfamily protein 1Chr13:24744740–24746437 (+)9.794e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.152e-15
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.152e-15
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)3.654e-16
Glyma.13G142200 hypothetical protein AT1G33410:SAR1:SUPPRESSOR OF AUXIN RESISTANCE1 1Chr13:25483702–25502265 (+)3.993e-14
Glyma.13G142500 hypothetical protein NA 1Chr13:25548232–25550097 (+)3.455e-12
Glyma.16G003000 hypothetical protein AT1G58025:AT1G58025:DNA-binding bromodomain-containing protein 1Chr16:164584–168767 (+)3.667e-11
Glyma.16G003200 hypothetical protein NA 1Chr16:172940–178668 (-)3.667e-11
Glyma.16G003600 hypothetical protein AT5G49945:AT5G49945: 1Chr16:198072–202486 (-)1.849e-11
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)1.81e-12
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)1.81e-12
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)1.494e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)5.647e-13
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)3.687e-12
Glyma.18G195000 hypothetical protein NA 1Chr18:46858462–46861415 (+)4.852e-11
Glyma.19G127500 hypothetical protein NA 1Chr19:38615244–38616720 (-)8.628e-11
Glyma.20G099200 hypothetical protein AT3G55410:AT3G55410:2-oxoglutarate dehydrogenase, E1 component__AT5G65750:AT5G65750:2-oxoglutarate dehydrogenase, E1 co… 1Chr20:34242852–34248956 (-)5.291e-11