Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P45319

Metabolite ID
P45319
Deionized mass
403.1533 Da
Average m/z
404.1634
Average RT
23.2356
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
48
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

48 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 8Chr16:36856833–36863994 (-)5.416e-20
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)7.891e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 3Chr16:36806718–36809299 (+)1.079e-13
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)1.302e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)3.265e-13
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)5.075e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)5.075e-13
Glyma.01G014800 hypothetical protein NA 1Chr01:1459585–1464612 (+)1.426e-11
Glyma.02G205400 hypothetical protein AT5G57880:MPS1:multipolar spindle 1 1Chr02:39040135–39043181 (-)5.634e-11
Glyma.02G303600 hypothetical protein NA 1Chr02:47883626–47887124 (-)6.207e-14
Glyma.02G303700 hypothetical protein NA 1Chr02:47892900–47896207 (+)6.207e-14
Glyma.02G304000 hypothetical protein AT1G51350:AT1G51350:ARM repeat superfamily protein 1Chr02:47908136–47915999 (-)6.207e-14
Glyma.02G304500 hypothetical protein AT5G48300:ADG1:ADP glucose pyrophosphorylase 1 1Chr02:47950037–47954106 (+)1.015e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)5.245e-12
Glyma.05G125800 hypothetical protein AT2G34790:MEE23:FAD-binding Berberine family protein 1Chr05:31926976–31929133 (+)5.497e-11
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)6.08e-12
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)6.08e-12
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)6.08e-12
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)6.651e-12
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)7.891e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)7.891e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)1.306e-12
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)1.055e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)3.255e-13
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)3.255e-13
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)3.265e-13
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)4.951e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)5.075e-13
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)5.075e-13
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)5.11e-13
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)1.273e-16
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)5.546e-11
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)6.53e-11
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)9.239e-11
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)4.416e-11
Glyma.16G207200 hypothetical protein AT2G44150:ASHH3:histone-lysine N-methyltransferase ASHH3 1Chr16:36705861–36716997 (+)2.153e-12
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)1.1e-11
Glyma.16G208100 hypothetical protein AT5G23530:CXE18:carboxyesterase 18 1Chr16:36776806–36778169 (+)1.511e-11
Glyma.16G208300 hypothetical protein AT5G23530:CXE18:carboxyesterase 18 1Chr16:36786114–36787686 (+)9.908e-12
Glyma.16G208400 hypothetical protein NA 1Chr16:36789890–36801967 (-)2.162e-13
Glyma.16G209000 hypothetical protein NA 1Chr16:36841786–36845498 (-)3.134e-11
Glyma.16G209400 hypothetical protein AT1G17840:ABCG11:white-brown complex-like protein 1Chr16:36871978–36878151 (-)1.582e-12
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)1.302e-12
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)1.687e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)1.687e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)2.086e-11
Glyma.18G091600 hypothetical protein NA 1Chr18:9165090–9166656 (-)3.978e-12
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)4.338e-13