Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P45078

Metabolite ID
P45078
Deionized mass
679.3566 Da
Average m/z
680.3613
Average RT
23.0388
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
45
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

45 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)1.479e-12
Glyma.03G035500 hypothetical protein NA 2Chr03:4289118–4294184 (+)1.068e-13
Glyma.05G223100 hypothetical protein AT2G19680:AT2G19680:Mitochondrial ATP synthase subunit G protein 2Chr05:40259388–40262641 (+)1.113e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)2.793e-12
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)1.207e-11
Glyma.16G121500 hypothetical protein NA 2Chr16:27007186–27010856 (+)1.172e-11
Glyma.19G005200 hypothetical protein AT3G27640:AT3G27640:Transducin/WD40 repeat-like superfamily protein 2Chr19:472201–476152 (-)2.379e-16
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.874e-12
Glyma.03G035400 hypothetical protein AT3G42630:AT3G42630:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:4282985–4285957 (-)4.146e-14
Glyma.03G036600 hypothetical protein NA 1Chr03:4432910–4435002 (-)2.781e-11
Glyma.03G036800 TBP1 AT3G13445:TBP1:TATA binding protein 1 1Chr03:4472672–4477787 (-)3.889e-11
Glyma.03G037300 hypothetical protein NA 1Chr03:4566741–4573890 (+)1.287e-11
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 1Chr03:5113019–5121557 (+)7.72e-11
Glyma.05G224200 hypothetical protein NA 1Chr05:40307329–40312025 (+)6.77e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.218e-11
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.111e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)5.168e-13
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)5.168e-13
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)5.168e-13
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)2.662e-13
Glyma.06G136200 hypothetical protein AT5G54170:AT5G54170:Polyketide cyclase/dehydrase and lipid transport superfamily protein 1Chr06:11160066–11162505 (-)7.29e-11
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)6.956e-12
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)5.903e-11
Glyma.09G269100 hypothetical protein NA 1Chr09:48651429–48653656 (-)1.071e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)8.711e-12
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)8.711e-12
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)8.711e-12
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)6.432e-13
Glyma.13G049100 hypothetical protein NA 1Chr13:14498952–14506408 (-)1.704e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)1.479e-12
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)2.515e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)1.791e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)3.421e-12
Glyma.14G197700 hypothetical protein AT5G58470:TAF15b:TBP-associated factor 15B 1Chr14:46291986–46298337 (+)7.496e-11
Glyma.14G198000 hypothetical protein NA 1Chr14:46334117–46336863 (+)7.496e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.207e-11
Glyma.16G041800 hypothetical protein NA 1Chr16:3914214–3917387 (-)2.546e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)3.956e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)2.9e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.229e-11
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)8.707e-12
Glyma.16G121400 hypothetical protein NA 1Chr16:26989007–26992349 (+)6.64e-11
Glyma.16G144700 hypothetical protein AT5G66960:AT5G66960:Prolyl oligopeptidase family protein 1Chr16:30514629–30519598 (+)2.027e-12
Glyma.16G168500 hypothetical protein NA 1Chr16:32844099–32848267 (+)1.689e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)9.259e-12