Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P44476

Metabolite ID
P44476
Deionized mass
1041.5175 Da
Average m/z
1042.5278
Average RT
22.6708
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
41
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

41 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.15G192700 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 3Chr15:21029024–21058079 (-)4.088e-12
Glyma.16G077600 hypothetical protein AT3G18760:AT3G18760:Translation elongation factor EF1B/ribosomal protein S6 family protein 2Chr16:7985004–7987315 (-)4.893e-14
Glyma.16G078200 hypothetical protein AT3G21600:AT3G21600:Senescence/dehydration-associated protein-like protein 2Chr16:8060944–8066661 (-)1.27e-12
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 2Chr18:47102746–47129707 (+)6.796e-11
Glyma.01G010200 hypothetical protein AT1G32060:PRK:phosphoribulokinase 1Chr01:993024–997480 (-)9.825e-11
Glyma.01G010400 SLTI248 DEAD-box RNA helicase AT1G31970:STRS1:DEA(D/H)-box RNA helicase family protein 1Chr01:1009200–1013846 (+)4.228e-11
Glyma.01G017900 hypothetical protein NA 1Chr01:1734474–1735545 (+)3.329e-11
Glyma.01G021600 hypothetical protein AT5G65540:AT5G65540:transcription initiation factor TFIID subunit 1Chr01:2189923–2194362 (-)3.549e-11
Glyma.01G021700 hypothetical protein NA 1Chr01:2197811–2200232 (+)5.371e-11
Glyma.01G022000 hypothetical protein NA 1Chr01:2209688–2210849 (-)5.371e-11
Glyma.01G022200 hypothetical protein NA 1Chr01:2212834–2213622 (+)5.371e-11
Glyma.05G122300 hypothetical protein AT3G60360:EDA14:embryo sac development arrest 14 1Chr05:31585853–31588967 (-)6.145e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.174e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)5.236e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.705e-11
Glyma.07G068200 hypothetical protein AT4G00310:EDA8:Putative membrane lipoprotein 1Chr07:6146155–6148036 (-)1.305e-11
Glyma.08G149500 hypothetical protein NA 1Chr08:11460264–11465243 (-)6.934e-11
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)2.276e-12
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)2.276e-12
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)1.601e-14
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)7.071e-11
Glyma.10G238200 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr10:46680865–46684088 (+)9.666e-11
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)9.055e-13
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)7.349e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)7.349e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)5.827e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)8.956e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)5.827e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)5.827e-12
Glyma.15G192400 hypothetical protein AT5G49150:GEX2:gamete expressed 2 1Chr15:20964449–20974340 (+)4.088e-12
Glyma.15G192900 hypothetical protein NA 1Chr15:21108370–21110353 (+)4.088e-12
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)2.296e-11
Glyma.16G112600 hypothetical protein NA 1Chr16:25015407–25020098 (-)2.215e-13
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)6.252e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)2.669e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)2.008e-11
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)2.024e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)1.685e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)3.46e-11
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)3.996e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.366e-11