Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P44053

Metabolite ID
P44053
Deionized mass
702.3288 Da
Average m/z
703.3350
Average RT
22.4011
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
74
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

74 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 5Chr04:7187985–7192897 (+)3.434e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 4Chr16:26324650–26336836 (+)1.109e-14
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)1.109e-14
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)1.839e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)3.936e-11
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)7.06e-12
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)2.289e-11
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)5.873e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)8.172e-11
Glyma.02G222400 hypothetical protein AT2G36460:FBA6:Aldolase superfamily protein 1Chr02:40998557–41001678 (-)6.05e-11
Glyma.03G152800 hypothetical protein AT4G09820:TT8:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr03:36782245–36790298 (+)2.625e-13
Glyma.03G153200 hypothetical protein NA 1Chr03:36815745–36819041 (-)2.625e-13
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)3.766e-13
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)9.577e-13
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.247e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.767e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.767e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)7.736e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)6.848e-15
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)6.848e-15
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)6.848e-15
Glyma.05G149300 hypothetical protein AT2G03870:EMB2816:Small nuclear ribonucleoprotein family protein 1Chr05:34357418–34361032 (-)1.612e-11
Glyma.05G149900 hypothetical protein NA 1Chr05:34389242–34393621 (-)1.612e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)4.146e-18
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.981e-24
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.665e-14
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.756e-13
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.756e-13
Glyma.06G168700 hypothetical protein AT5G63520:AT5G63520:F-box/LRR protein 1Chr06:14104416–14111842 (+)8.539e-12
Glyma.06G324300 GmCSyGT1 NA 1Chr06:51189321–51193954 (-)5.144e-11
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)9.015e-13
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)5.263e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)3.936e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)3.936e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)3.936e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)3.936e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)9.972e-11
Glyma.09G110000 hypothetical protein NA 1Chr09:21593730–21602127 (+)2.767e-12
Glyma.09G186700 hypothetical protein AT1G20050:HYD1:C-8,7 sterol isomerase 1Chr09:41147591–41150204 (+)1.917e-11
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)3.028e-13
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)8.989e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)8.989e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)8.989e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)8.989e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)5.97e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)5.97e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.762e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.762e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)8.378e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)8.019e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)8.019e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)1.618e-12
Glyma.13G197700 hypothetical protein AT5G38730:AT5G38730:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr13:31174654–31180595 (-)6.288e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)2.442e-12
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)2.442e-12
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)2.442e-12
Glyma.13G237900 hypothetical protein NA 1Chr13:34809361–34816888 (-)1.437e-11
Glyma.14G190100 hypothetical protein AT2G04280:AT2G04280:calcium ion-binding protein 1Chr14:45502008–45504459 (+)6.164e-11
Glyma.15G030100 hypothetical protein AT2G43290:MSS3:Calcium-binding EF-hand family protein__AT4G03290:AT4G03290:EF hand calcium-binding protein family 1Chr15:2420032–2426219 (+)7.783e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)9.734e-12
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)1.109e-14
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)1.109e-14
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)4.185e-11
Glyma.16G196900 hypothetical protein NA 1Chr16:35841279–35846894 (-)5.874e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)7.186e-11
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)1.839e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)3.904e-13
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)3.904e-13
Glyma.16G219700 hypothetical protein NA 1Chr16:37690133–37695529 (-)6.619e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)6.041e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)6.041e-11
Glyma.18G045700 hypothetical protein NA 1Chr18:3956176–3958846 (+)3.608e-11
Glyma.18G108400 hypothetical protein NA 1Chr18:12370997–12390275 (-)4.664e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)2.986e-11