Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P43807

Metabolite ID
P43807
Deionized mass
409.2142 Da
Average m/z
410.2200
Average RT
22.2735
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
79
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

79 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 3Chr03:2423540–2428634 (-)4.481e-13
Glyma.07G095000 hypothetical protein NA 3Chr07:8843665–8855430 (+)7.642e-11
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 2Chr04:7187985–7192897 (+)8.478e-13
Glyma.06G183500 hypothetical protein AT5G50000:AT5G50000:Protein kinase superfamily protein 2Chr06:15828917–15834067 (+)1.786e-11
Glyma.06G206000 hypothetical protein AT5G08110:AT5G08110:UBQ, helicase-c and DEAD-like helicase domain-containing protein 2Chr06:19693187–19711341 (-)5.479e-12
Glyma.06G207100 hypothetical protein AT1G73990:SPPA:signal peptide peptidase 2Chr06:19963095–19969940 (-)1.983e-11
Glyma.06G209300 hypothetical protein NA 2Chr06:20573671–20581076 (-)3.813e-14
Glyma.06G209600 hypothetical protein AT1G48960:AT1G48960:Adenine nucleotide alpha hydrolases-like superfamily protein 2Chr06:20638577–20641470 (+)2.256e-13
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)4.705e-13
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 2Chr06:50401945–50408153 (+)3.752e-13
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)8.663e-12
Glyma.10G038400 hypothetical protein NA 2Chr10:3400759–3409406 (+)2.842e-11
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)8.003e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)1.85e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)3.695e-11
Glyma.03G016700 hypothetical protein AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr03:1683395–1688893 (-)8.597e-11
Glyma.03G031700 hypothetical protein AT1G79600:AT1G79600:Protein kinase superfamily protein 1Chr03:3567906–3572939 (-)3.85e-11
Glyma.03G035600 hypothetical protein NA 1Chr03:4295128–4296444 (-)5.7e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)9.011e-11
Glyma.04G082800 hypothetical protein NA 1Chr04:6977997–6983005 (-)5.709e-11
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)8.327e-13
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)3.062e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.269e-17
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.148e-13
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)8.647e-11
Glyma.06G205800 AP1A agamous-like MADS-box AT5G60910:AGL8:AGAMOUS-like 8 1Chr06:19583729–19590906 (+)5.479e-12
Glyma.06G207900 hypothetical protein NA 1Chr06:20278974–20282107 (-)2.256e-13
Glyma.06G208000 hypothetical protein AT1G74000:SS3:strictosidine synthase 3 1Chr06:20286288–20288769 (+)2.256e-13
Glyma.06G208200 hypothetical protein NA 1Chr06:20310840–20315335 (-)3.58e-11
Glyma.06G208400 hypothetical protein NA 1Chr06:20340943–20343156 (-)3.58e-11
Glyma.06G208500 hypothetical protein NA 1Chr06:20373965–20376794 (-)3.58e-11
Glyma.06G208600 hypothetical protein NA 1Chr06:20375315–20376776 (-)3.58e-11
Glyma.06G208900 hypothetical protein NA 1Chr06:20515068–20521900 (-)2.256e-13
Glyma.06G209400 hypothetical protein NA 1Chr06:20622369–20629712 (+)2.256e-13
Glyma.06G210000 hypothetical protein NA 1Chr06:20706632–20708144 (-)2.256e-13
Glyma.06G210100 hypothetical protein NA 1Chr06:20725481–20728890 (-)2.256e-13
Glyma.06G210400 hypothetical protein AT1G03280:AT1G03280:Transcription factor TFIIE, alpha subunit 1Chr06:20768340–20778709 (-)2.256e-13
Glyma.06G210900 hypothetical protein AT3G24330:AT3G24330:O-Glycosyl hydrolases family 17 protein 1Chr06:20942818–20945744 (+)2.256e-13
Glyma.06G211200 hypothetical protein AT1G03390:AT1G03390:HXXXD-type acyl-transferase family protein 1Chr06:20982278–20984294 (+)3.58e-11
Glyma.06G211400 hypothetical protein AT5G22950:VPS24.1:SNF7 family protein 1Chr06:21093799–21101088 (+)5.964e-11
Glyma.06G211500 hypothetical protein AT5G19950:AT5G19950:tudor domain protein (DUF1767) 1Chr06:21104409–21114116 (-)2.256e-13
Glyma.06G211700 hypothetical protein NA 1Chr06:21226061–21226529 (-)5.649e-11
Glyma.06G211800 hypothetical protein NA 1Chr06:21237649–21239875 (+)5.649e-11
Glyma.06G213600 hypothetical protein NA 1Chr06:21713618–21726865 (+)5.649e-11
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)4.569e-11
Glyma.06G316500 hypothetical protein AT2G47420:DIM1A:Ribosomal RNA adenine dimethylase family protein 1Chr06:50531222–50538652 (-)1.329e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)9.038e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)8.663e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)8.663e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)8.663e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)8.663e-12
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)6.744e-11
Glyma.10G038600 hypothetical protein AT4G28540:CKL6:casein kinase I-like 6 1Chr10:3423991–3432355 (+)5.051e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.22e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.22e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.22e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.22e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.049e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.103e-12
Glyma.10G263800 hypothetical protein AT1G23010:LPR1:Cupredoxin superfamily protein 1Chr10:48805999–48811533 (-)1.294e-11
Glyma.11G058500 hypothetical protein AT4G37190:AT4G37190:plasma membrane, autoregulation-binding site, misato segment II, myosin-like, tubulin/FtsZ protein 1Chr11:4417029–4423791 (-)3.546e-11
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)4.133e-12
Glyma.11G090300 hypothetical protein AT4G19190:AT4G19190:zinc knuckle (CCHC-type) family protein 1Chr11:6849007–6855564 (+)7.325e-12
Glyma.11G179000 hypothetical protein AT2G27230:LHW:transcription factor-like protein 1Chr11:24412040–24417199 (+)5.362e-11
Glyma.12G003500 hypothetical protein AT5G61670:AT5G61670:orange protein 1Chr12:285588–289372 (-)4.372e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)7.709e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)7.709e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)7.343e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)7.343e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)4.558e-14
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)3.352e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)6.201e-11
Glyma.18G055400 hypothetical protein NA 1Chr18:4824726–4828902 (+)1.982e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)2.285e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)4.257e-11
Glyma.20G120200 hypothetical protein NA 1Chr20:36268998–36282456 (-)4.787e-11
Glyma.20G179600 hypothetical protein AT2G39220:PLP6:PATATIN-like protein 6__AT3G54950:pPLAIIIbeta:patatin-like protein 6 1Chr20:41714740–41719977 (-)5.445e-12
Glyma.20G217600 hypothetical protein NA 1Chr20:45339886–45344226 (+)5.278e-12
Glyma.20G217800 hypothetical protein AT1G32850:UBP11:ubiquitin-specific protease 11__AT4G10590:UBP10:ubiquitin-specific protease 10 1Chr20:45369972–45380130 (+)5.278e-12