Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P43762

Metabolite ID
P43762
Deionized mass
744.4462 Da
Average m/z
745.4477
Average RT
22.2622
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
76
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

76 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G021400 hypothetical protein AT2G45540:AT2G45540:WD-40 repeat family protein / beige-like protein 9Chr03:2202325–2234931 (+)1.188e-17
Glyma.03G021000 hypothetical protein NA 4Chr03:2148298–2162954 (-)8.723e-12
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 4Chr19:1134716–1143232 (+)2.72e-12
Glyma.03G021600 hypothetical protein AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2__AT2G44890:CYP704A1:cytochrome P450, family … 3Chr03:2240686–2246512 (-)7.875e-16
Glyma.07G068300 hypothetical protein AT5G62980:FOLB2:Dihydroneopterin aldolase__AT3G11750:FOLB1:Dihydroneopterin aldolase 2Chr07:6169729–6172231 (+)3.987e-13
Glyma.07G068600 hypothetical protein NA 2Chr07:6192764–6197166 (+)1.831e-13
Glyma.07G100400 hypothetical protein AT3G18050:AT3G18050:GPI-anchored protein 2Chr07:9523110–9526319 (+)1.395e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)8.697e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)2.679e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)2.679e-12
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)1.492e-12
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)6.171e-13
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)6.171e-13
Glyma.03G016700 hypothetical protein AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr03:1683395–1688893 (-)4.472e-11
Glyma.03G020800 hypothetical protein AT3G61050:NTMC2T4:Calcium-dependent lipid-binding (CaLB domain) family protein 1Chr03:2124895–2135692 (-)6.97e-16
Glyma.03G021100 hypothetical protein AT1G12650:AT1G12650:rRNA biosis RRP36-like protein 1Chr03:2162406–2167712 (+)1.78e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)5.411e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)3.372e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.083e-11
Glyma.03G046000 hypothetical protein AT1G58170:AT1G58170:Disease resistance-responsive (dirigent-like protein) family protein 1Chr03:5848597–5849782 (-)5.755e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.268e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.429e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.429e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.429e-11
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)2.033e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)4.701e-15
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)6.368e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.161e-11
Glyma.07G062300 hypothetical protein AT2G46220:AT2G46220:DUF2358 family protein (DUF2358) 1Chr07:5518907–5522005 (+)1.853e-11
Glyma.07G067600 hypothetical protein NA 1Chr07:6091311–6093654 (-)4.042e-11
Glyma.07G068000 hypothetical protein AT3G61460:BRH1: 1Chr07:6128862–6129740 (+)5.91e-13
Glyma.07G068200 hypothetical protein AT4G00310:EDA8:Putative membrane lipoprotein 1Chr07:6146155–6148036 (-)3.027e-12
Glyma.07G068400 hypothetical protein AT1G29320:AT1G29320:Transducin/WD40 repeat-like superfamily protein 1Chr07:6173172–6180430 (-)1.831e-13
Glyma.07G068700 hypothetical protein AT2G46060:AT2G46060:transmembrane protein-like protein 1Chr07:6200187–6208590 (+)9.577e-14
Glyma.07G068800 hypothetical protein NA 1Chr07:6211775–6221107 (-)9.577e-14
Glyma.07G069100 hypothetical protein NA 1Chr07:6246145–6250192 (+)1.831e-13
Glyma.07G071800 hypothetical protein AT4G20960:PyrD:Cytidine/deoxycytidylate deaminase family protein 1Chr07:6523253–6526707 (+)2.766e-13
Glyma.07G075000 hypothetical protein AT5G60990:AT5G60990:DEA(D/H)-box RNA helicase family protein 1Chr07:6821674–6829551 (-)2.692e-11
Glyma.07G075300 hypothetical protein NA 1Chr07:6843882–6845602 (-)2.692e-11
Glyma.07G075400 hypothetical protein NA 1Chr07:6849233–6853058 (+)1.606e-11
Glyma.07G087700 hypothetical protein AT3G24495:MSH7:MUTS homolog 7 1Chr07:8111751–8121053 (+)9.657e-12
Glyma.07G095400 hypothetical protein NA 1Chr07:8914725–8920132 (+)1.661e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)8.697e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)8.697e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)8.697e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)8.697e-12
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)1.057e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)6.002e-13
Glyma.10G263800 hypothetical protein AT1G23010:LPR1:Cupredoxin superfamily protein 1Chr10:48805999–48811533 (-)2.548e-13
Glyma.10G265400 hypothetical protein AT2G01290:RPI2: 1Chr10:48921268–48922795 (+)1.619e-11
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)4.029e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)4.664e-12
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)5.655e-12
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)5.656e-12
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)5.656e-12
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)5.656e-12
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)1.585e-13
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)5.276e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)5.276e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)2.679e-12
Glyma.13G237900 hypothetical protein NA 1Chr13:34809361–34816888 (-)9.538e-12
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)1.124e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)6.12e-11
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)8.558e-14
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)2.946e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.506e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)1.334e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)4.829e-12
Glyma.17G039700 hypothetical protein NA 1Chr17:2950710–2951791 (+)4.624e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)3.671e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)3.671e-11
Glyma.18G003300 hypothetical protein NA 1Chr18:276941–280909 (+)1.146e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)1.492e-12
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 1Chr19:1148510–1149495 (+)3.239e-11
Glyma.19G102000 ICE2 AT3G26744:ICE1:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr19:34998146–35001862 (+)1.806e-12
Glyma.19G102200 hypothetical protein AT2G31410:AT2G31410:coiled-coil protein 1Chr19:35024582–35025690 (+)1.806e-12