Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P43742

Metabolite ID
P43742
Deionized mass
646.4088 Da
Average m/z
647.4189
Average RT
22.2555
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
116
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

116 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.17G217900 hypothetical protein NA 4Chr17:36771760–36778616 (-)1.939e-12
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)8.932e-11
Glyma.01G036200 hypothetical protein AT1G10510:emb2004:RNI-like superfamily protein 3Chr01:3791180–3811591 (-)2.626e-12
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 3Chr13:31727841–31735910 (-)1.612e-12
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)7.989e-11
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)8.274e-11
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)2.234e-12
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 2Chr05:32421116–32425198 (-)1.342e-11
Glyma.08G182500 hypothetical protein NA 2Chr08:14639429–14643788 (+)1.546e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)1.297e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)4.496e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)4.496e-13
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)3.675e-11
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)3.468e-13
Glyma.18G100200 hypothetical protein NA 2Chr18:10512806–10522231 (+)2.315e-13
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)8.932e-11
Glyma.01G034300 hypothetical protein NA 1Chr01:3573149–3579461 (-)4.168e-11
Glyma.01G036500 hypothetical protein AT1G59980:ARL2:ARG1-like 2__AT1G24120:ARL1:ARG1-like 1 1Chr01:3821377–3825854 (-)2.626e-12
Glyma.01G037200 hypothetical protein NA 1Chr01:3946315–3948100 (-)6.117e-14
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)6.271e-12
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 1Chr03:2007617–2009871 (+)5.01e-13
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)6.94e-15
Glyma.03G042300 hypothetical protein NA 1Chr03:5350737–5353536 (-)8.877e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)1.18e-11
Glyma.04G018000 hypothetical protein AT5G42310:AT5G42310:Pentatricopeptide repeat (PPR-like) superfamily protein 1Chr04:1402993–1407323 (-)1.795e-14
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)1.469e-13
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)8.116e-13
Glyma.04G190200 hypothetical protein AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 1Chr04:46086785–46089618 (-)2.875e-14
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)1.105e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)6.888e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.257e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)3.62e-14
Glyma.06G121000 hypothetical protein NA 1Chr06:9848464–9850191 (-)8.777e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.25e-14
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.25e-14
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)5.874e-13
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)2.301e-12
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)4.94e-12
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.157e-13
Glyma.08G148500 hypothetical protein AT3G19860:bHLH121:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr08:11362991–11368184 (-)3.375e-12
Glyma.08G182000 hypothetical protein NA 1Chr08:14601875–14604750 (+)6.629e-11
Glyma.08G239500 hypothetical protein AT4G09180:FBH2:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr08:20444715–20447665 (-)2.316e-14
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)7.659e-12
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)3.923e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)1.454e-11
Glyma.09G238200 NIP2-1 putative Si transporter NIP2-1 NA 1Chr09:46029192–46034136 (+)1.593e-11
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)6.973e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)8.871e-12
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)4.974e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)4.974e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)4.974e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)4.974e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.608e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.207e-11
Glyma.11G024800 hypothetical protein NA 1Chr11:1754343–1759398 (+)5.252e-11
Glyma.11G110300 hypothetical protein AT2G16530:AT2G16530:3-oxo-5-alpha-steroid 4-dehydrogenase family protein__AT1G72590:AT1G72590:3-oxo-5-alpha-steroid 4-d… 1Chr11:8402144–8406496 (-)4.431e-12
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)4.745e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)4.745e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)4.745e-11
Glyma.11G179000 hypothetical protein AT2G27230:LHW:transcription factor-like protein 1Chr11:24412040–24417199 (+)7.565e-12
Glyma.11G182600 hypothetical protein AT5G22400:AT5G22400:Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein 1Chr11:24998933–25003549 (-)9.225e-11
Glyma.12G008300 hypothetical protein AT3G21640:TWD1:FKBP-type peptidyl-prolyl cis-trans isomerase family protein 1Chr12:613939–617457 (+)2.146e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)8.951e-16
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)8.951e-16
Glyma.12G212800 hypothetical protein NA 1Chr12:37179924–37185798 (-)9.051e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)1.297e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.174e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.174e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)4.496e-13
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)3.074e-11
Glyma.13G203600 hypothetical protein AT5G13490:AAC2:ADP/ATP carrier 2 1Chr13:31753843–31756013 (-)3.959e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.06e-15
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)3.675e-11
Glyma.14G190100 hypothetical protein AT2G04280:AT2G04280:calcium ion-binding protein 1Chr14:45502008–45504459 (+)5.684e-12
Glyma.14G190300 hypothetical protein AT2G04240:XERICO:RING/U-box superfamily protein 1Chr14:45531920–45533895 (-)2.571e-12
Glyma.14G190400 hypothetical protein AT3G07650:COL9:CONSTANS-like 9 1Chr14:45536719–45544087 (-)2.571e-12
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)3.986e-11
Glyma.15G070100 hypothetical protein AT1G61140:EDA16:SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 1Chr15:5355553–5364428 (+)1.612e-13
Glyma.15G071600 hypothetical protein AT4G21660:AT4G21660:proline-rich spliceosome-associated (PSP) family protein 1Chr15:5481672–5488866 (-)1.612e-13
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.145e-14
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.158e-17
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)1.299e-12
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)7.818e-12
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)1.79e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)4.312e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)7.989e-11
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)7.989e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)7.989e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)8.119e-11
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)3.566e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)3.695e-11
Glyma.16G196400 hypothetical protein AT5G07270:XBAT33:uncharacterized protein 1Chr16:35782198–35790495 (-)3.902e-11
Glyma.16G196900 hypothetical protein NA 1Chr16:35841279–35846894 (-)2.6e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)4.778e-11
Glyma.17G064100 hypothetical protein AT5G57490:VDAC4:voltage dependent anion channel 4 1Chr17:4930968–4937489 (-)5.175e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)4.778e-11
Glyma.17G092800 hypothetical protein NA 1Chr17:7253511–7255621 (-)2.527e-12
Glyma.17G135100 hypothetical protein AT1G62840:AT1G62840:ankyrin repeat/KH domain protein (DUF1442) 1Chr17:10870710–10872285 (+)8.443e-11
Glyma.17G213000 hypothetical protein NA 1Chr17:35353582–35358772 (+)5.276e-11
Glyma.17G214600 hypothetical protein NA 1Chr17:36049053–36054871 (-)5.504e-11
Glyma.17G215300 hypothetical protein AT5G25265:AT5G25265:Hyp O-arabinosyltransferase-like protein 1Chr17:36142245–36146771 (-)8.429e-12
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)2.051e-13
Glyma.17G218400 hypothetical protein NA 1Chr17:36900654–36906204 (+)2.072e-11
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)2.234e-12
Glyma.18G099600 hypothetical protein AT4G27040:VPS22:EAP30/Vps36 family protein 1Chr18:10453308–10458891 (-)2.315e-13
Glyma.18G099700 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr18:10459970–10464888 (-)2.158e-13
Glyma.18G099900 hypothetical protein AT1G47578:AT1G47578:Biotin/lipoate A/B protein ligase family__AT4G31050:AT4G31050:Biotin/lipoate A/B protein ligase fam… 1Chr18:10471443–10475076 (+)2.315e-13
Glyma.18G179200 hypothetical protein NA 1Chr18:43222934–43228759 (-)3.769e-13
Glyma.19G009000 hypothetical protein AT5G14780:FDH:formate dehydrogenase 1Chr19:860974–865476 (+)7.987e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.775e-14
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.775e-14
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)3.822e-11
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)3.959e-12
Glyma.20G105100 hypothetical protein NA 1Chr20:34737596–34737811 (-)7.08e-11
Glyma.20G105500 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein__AT5G05320:AT5G05320:FAD/NAD(P)-binding oxidoreduc… 1Chr20:34813357–34815998 (-)2.045e-12
Glyma.20G107700 hypothetical protein AT2G16860:AT2G16860:GCIP-interacting family protein 1Chr20:35033414–35036538 (+)5.91e-11