Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P43144

Metabolite ID
P43144
Deionized mass
545.2495 Da
Average m/z
546.2561
Average RT
21.8664
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
138
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

138 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 5Chr03:2423540–2428634 (-)5.174e-22
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)7.272e-11
Glyma.03G021000 hypothetical protein NA 3Chr03:2148298–2162954 (-)2.318e-11
Glyma.16G196900 hypothetical protein NA 3Chr16:35841279–35846894 (-)1.552e-12
Glyma.03G020800 hypothetical protein AT3G61050:NTMC2T4:Calcium-dependent lipid-binding (CaLB domain) family protein 2Chr03:2124895–2135692 (-)4.247e-13
Glyma.03G021400 hypothetical protein AT2G45540:AT2G45540:WD-40 repeat family protein / beige-like protein 2Chr03:2202325–2234931 (+)3.251e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)3.461e-12
Glyma.07G068300 hypothetical protein AT5G62980:FOLB2:Dihydroneopterin aldolase__AT3G11750:FOLB1:Dihydroneopterin aldolase 2Chr07:6169729–6172231 (+)3.721e-12
Glyma.07G068600 hypothetical protein NA 2Chr07:6192764–6197166 (+)3.331e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)9.483e-15
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)5.652e-12
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)5.57e-14
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)4.259e-16
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)4.259e-16
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)6.36e-12
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)6.756e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)7.885e-14
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)3.653e-11
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)1.458e-11
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 2Chr18:47102746–47129707 (+)6.374e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)7.272e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)8.003e-16
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)8.003e-16
Glyma.01G173900 hypothetical protein NA 1Chr01:51092004–51094319 (+)7.365e-12
Glyma.01G175500 hypothetical protein AT3G50660:DWF4:Cytochrome P450 superfamily protein 1Chr01:51219681–51224948 (+)6.335e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)1.826e-11
Glyma.03G020900 hypothetical protein AT3G18030:HAL3A:HAL3-like protein A 1Chr03:2143987–2147131 (-)4.12e-11
Glyma.03G022400 hypothetical protein NA 1Chr03:2334661–2335316 (+)5.201e-11
Glyma.04G104400 hypothetical protein NA 1Chr04:9885009–9889282 (+)9.379e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)6.478e-12
Glyma.04G190200 hypothetical protein AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 1Chr04:46086785–46089618 (-)3.41e-11
Glyma.04G190700 hypothetical protein NA 1Chr04:46143583–46146881 (+)4.618e-11
Glyma.04G190800 hypothetical protein AT5G07460:PMSR2:peptidemethionine sulfoxide reductase 2 1Chr04:46143080–46147709 (-)4.618e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)8.694e-14
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)1.064e-12
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)7.462e-13
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)2.133e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)2.133e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)9.632e-14
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)8.907e-14
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)8.906e-14
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)8.907e-14
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)6.606e-14
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)9.326e-11
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)8.051e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)4.27e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)6.441e-15
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)3.565e-12
Glyma.06G079400 hypothetical protein NA 1Chr06:6105463–6107101 (+)5.978e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)4.358e-15
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)4.358e-15
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)9.086e-12
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)1.391e-11
Glyma.07G021100 hypothetical protein NA 1Chr07:1647678–1650627 (+)6.029e-11
Glyma.07G021600 hypothetical protein AT5G48930:HCT:hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 1Chr07:1673827–1680014 (-)6.03e-11
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)1.89e-11
Glyma.07G068000 hypothetical protein AT3G61460:BRH1: 1Chr07:6128862–6129740 (+)4.556e-12
Glyma.07G068200 hypothetical protein AT4G00310:EDA8:Putative membrane lipoprotein 1Chr07:6146155–6148036 (-)1.339e-12
Glyma.07G068400 hypothetical protein AT1G29320:AT1G29320:Transducin/WD40 repeat-like superfamily protein 1Chr07:6173172–6180430 (-)3.331e-12
Glyma.07G068700 hypothetical protein AT2G46060:AT2G46060:transmembrane protein-like protein 1Chr07:6200187–6208590 (+)2.269e-12
Glyma.07G068800 hypothetical protein NA 1Chr07:6211775–6221107 (-)2.269e-12
Glyma.07G069100 hypothetical protein NA 1Chr07:6246145–6250192 (+)3.331e-12
Glyma.07G071000 hypothetical protein AT4G00480:ATMYC1:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr07:6464646–6470484 (+)8.238e-12
Glyma.07G071800 hypothetical protein AT4G20960:PyrD:Cytidine/deoxycytidylate deaminase family protein 1Chr07:6523253–6526707 (+)9.263e-13
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)4.225e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)9.483e-15
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)9.483e-15
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)9.483e-15
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)9.483e-15
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)1.435e-11
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)2.539e-12
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)6.696e-12
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)7.124e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)4.632e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)2.743e-11
Glyma.09G280300 hypothetical protein AT2G38480:AT2G38480:Uncharacterized protein family (UPF0497) 1Chr09:49547489–49550731 (-)3.391e-12
Glyma.09G281400 hypothetical protein AT3G18620:AT3G18620:DHHC-type zinc finger family protein 1Chr09:49668985–49676216 (-)6.562e-11
Glyma.09G281700 hypothetical protein NA 1Chr09:49705303–49733182 (-)6.562e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)3.893e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)5.283e-11
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)4.85e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)3.604e-12
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)7.483e-12
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)7.483e-12
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)7.483e-12
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)7.483e-12
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)2.89e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)2.293e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)2.293e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)2.111e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)2.111e-11
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)1.745e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)4.818e-13
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)4.818e-13
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)9.967e-12
Glyma.13G049100 hypothetical protein NA 1Chr13:14498952–14506408 (-)9.089e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)5.57e-14
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)2.416e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)2.416e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)4.259e-16
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)4.305e-11
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)4.658e-12
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.156e-12
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)6.756e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)3.46e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)4.535e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)3.46e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)3.46e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.891e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)4.793e-13
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)9.915e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.088e-13
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)2.239e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)4.997e-14
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)6.998e-12
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)7.885e-13
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)7.369e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)9.223e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)9.223e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)1.28e-15
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)1.28e-15
Glyma.17G092800 hypothetical protein NA 1Chr17:7253511–7255621 (-)6.718e-12
Glyma.17G118900 hypothetical protein NA 1Chr17:9401882–9402864 (+)2.721e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)3.008e-12
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)3.653e-11
Glyma.18G108400 hypothetical protein NA 1Chr18:12370997–12390275 (-)9.801e-12
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)2.928e-11
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)1.766e-11
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)3.3e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)1.981e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.96e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.96e-13
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)3.027e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)1.912e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)2.953e-11
Glyma.20G101700 hypothetical protein AT5G08580:AT5G08580:Calcium-binding EF hand family protein 1Chr20:34467936–34475476 (-)8.118e-12
Glyma.20G105100 hypothetical protein NA 1Chr20:34737596–34737811 (-)4.126e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)4.223e-11