Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P43086

Metabolite ID
P43086
Deionized mass
293.6759 Da
Average m/z
294.6839
Average RT
21.8180
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
115
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

115 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)1.404e-12
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 3Chr20:34984922–34988496 (+)2.628e-13
Glyma.01G030500 hypothetical protein NA 2Chr01:3189212–3200277 (+)1.334e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)5.373e-12
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)3.049e-11
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)1.14e-12
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)3.494e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)1.404e-12
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)2.07e-14
Glyma.01G037200 hypothetical protein NA 1Chr01:3946315–3948100 (-)8.075e-12
Glyma.01G046600 hypothetical protein AT1G14280:PKS2:phytochrome kinase substrate 2 1Chr01:5379316–5382027 (-)3.424e-11
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)6.443e-11
Glyma.01G173900 hypothetical protein NA 1Chr01:51092004–51094319 (+)3.475e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)4.692e-12
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)6.705e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)6.168e-12
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)5.348e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)8.287e-16
Glyma.03G223000 hypothetical protein AT1G02500:SAM1:S-adenosylmethionine synthetase 1 1Chr03:42579900–42582675 (+)7.857e-12
Glyma.03G223300 hypothetical protein AT3G62190:AT3G62190:Chaperone DnaJ-domain superfamily protein 1Chr03:42601145–42604438 (-)1.319e-12
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)1.019e-12
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.636e-13
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)7.221e-14
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)1.96e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)3.274e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)3.274e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.246e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)3.885e-13
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)3.885e-13
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)3.885e-13
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.372e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.153e-12
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)8.781e-13
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)5.877e-13
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)5.877e-13
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)5.877e-13
Glyma.06G121000 hypothetical protein NA 1Chr06:9848464–9850191 (-)9.59e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)4.826e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)4.826e-11
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)6.6e-13
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)3.786e-11
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)3.786e-11
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)1.608e-11
Glyma.08G150100 hypothetical protein AT2G44450:BGLU15:beta glucosidase 15 1Chr08:11525692–11536927 (+)4.953e-11
Glyma.08G204700 hypothetical protein AT1G79840:GL2:HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain-containing protein 1Chr08:16594092–16600507 (+)3.193e-11
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)1.807e-15
Glyma.08G204900 hypothetical protein NA 1Chr08:16602807–16605982 (-)9.069e-11
Glyma.08G205000 hypothetical protein AT1G79870:AT1G79870:D-isomer specific 2-hydroxyacid dehydrogenase family protein 1Chr08:16609095–16610030 (+)9.069e-11
Glyma.08G205200 hypothetical protein AT1G15230:AT1G15230:uncharacterized protein 1Chr08:16611893–16613679 (-)2.164e-11
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)2.152e-18
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)2.152e-18
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)1.013e-14
Glyma.08G212600 hypothetical protein AT1G80120:AT1G80120:LURP-one-like protein (DUF567) 1Chr08:17146617–17147928 (-)6.736e-11
Glyma.08G213200 hypothetical protein AT3G15890:AT3G15890:Protein kinase superfamily protein 1Chr08:17200661–17204670 (+)1.674e-11
Glyma.08G213600 hypothetical protein AT1G48900:AT1G48900:Signal recognition particle, SRP54 subunit protein__AT5G49500:AT5G49500:Signal recognition particle… 1Chr08:17239144–17242612 (-)1.674e-11
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)5.464e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.024e-11
Glyma.09G167000 hypothetical protein NA 1Chr09:39103764–39109664 (-)8.973e-13
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)7.999e-13
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)3.171e-14
Glyma.09G272300 hypothetical protein AT5G01950:AT5G01950:Leucine-rich repeat protein kinase family protein 1Chr09:48873276–48883421 (-)2.295e-11
Glyma.09G272800 hypothetical protein AT3G08670:AT3G08670:serine/arginine repetitive matrix-like protein 1Chr09:48916725–48921396 (+)2.295e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)9.096e-13
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)9.096e-13
Glyma.10G079700 hypothetical protein AT2G35980:YLS9:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family 1Chr10:9218478–9219468 (-)2.389e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)9.097e-13
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)9.097e-13
Glyma.10G080600 hypothetical protein NA 1Chr10:9501678–9504456 (+)1.722e-11
Glyma.10G080700 hypothetical protein NA 1Chr10:9510013–9512097 (+)1.722e-11
Glyma.10G080900 hypothetical protein NA 1Chr10:9552268–9552854 (+)1.722e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)3.083e-13
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)2.76e-12
Glyma.12G193800 hypothetical protein AT2G05710:ACO3:aconitase 3 1Chr12:35551596–35559129 (+)4.692e-13
Glyma.12G194000 hypothetical protein AT3G21690:AT3G21690:MATE efflux family protein 1Chr12:35567230–35571578 (+)1.889e-11
Glyma.12G211900 hypothetical protein NA 1Chr12:37084575–37088045 (+)9.127e-11
Glyma.12G212300 hypothetical protein AT3G58710:WRKY69:WRKY DNA-binding protein 69 1Chr12:37131153–37134096 (+)8.441e-11
Glyma.12G212500 hypothetical protein NA 1Chr12:37150677–37158587 (+)9.03e-11
Glyma.12G212800 hypothetical protein NA 1Chr12:37179924–37185798 (-)6.681e-13
Glyma.12G213100 hypothetical protein AT3G20560:PDIL5-3:PDI-like 5-3__AT4G27080:PDIL5-4:PDI-like 5-4 1Chr12:37207799–37215685 (+)9.03e-11
Glyma.12G213300 hypothetical protein AT4G27100:AT4G27100:Ypt/Rab-GAP domain of gyp1p superfamily protein 1Chr12:37219675–37228348 (+)9.03e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)1.198e-11
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)1.585e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)2.665e-12
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)2.665e-12
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)2.665e-12
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)5.602e-13
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)5.977e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)5.76e-11
Glyma.14G094200 hypothetical protein AT5G11840:AT5G11840:YCF36, putative (DUF1230) 1Chr14:8770378–8774149 (-)2.731e-11
Glyma.14G094300 hypothetical protein NA 1Chr14:8771316–8772515 (+)2.731e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)2.262e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)1.14e-12
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)3.494e-12
Glyma.15G070100 hypothetical protein AT1G61140:EDA16:SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 1Chr15:5355553–5364428 (+)1.433e-13
Glyma.15G071600 hypothetical protein AT4G21660:AT4G21660:proline-rich spliceosome-associated (PSP) family protein 1Chr15:5481672–5488866 (-)1.433e-13
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.422e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)4.062e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.422e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.422e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.391e-13
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.721e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)2.608e-11
Glyma.16G138900 hypothetical protein NA 1Chr16:29620531–29621995 (+)5.002e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)9.668e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)1.117e-12
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)1.117e-12
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)2.126e-13
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)2.126e-13
Glyma.17G121800 hypothetical protein AT1G73965:CLE13:CLAVATA3/ESR-RELATED 13 1Chr17:9746590–9748712 (+)2.367e-11
Glyma.18G106600 hypothetical protein NA 1Chr18:11947553–11951868 (+)9.964e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.254e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.254e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)1.415e-11
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)1.341e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)4.192e-11