Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P43068

Metabolite ID
P43068
Deionized mass
1925.0709 Da
Average m/z
963.5323
Average RT
21.8002
Adduct
[M+2H]2+
Association scope
Overlapping genes only
Associated genes
79
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

79 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)4.693e-12
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)1.611e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)2.661e-13
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)8.456e-14
Glyma.16G146700 hypothetical protein NA 2Chr16:30755899–30759360 (-)1.634e-11
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)6.186e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)3.97e-15
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)3.97e-15
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)7.794e-12
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)3.175e-15
Glyma.03G016700 hypothetical protein AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr03:1683395–1688893 (-)6.957e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.275e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.983e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)4.359e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)4.359e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)4.359e-11
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)2.348e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)4.188e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.757e-11
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)1.469e-13
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)2.69e-11
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)1.138e-11
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)5.612e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)2.661e-13
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)2.661e-13
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)2.661e-13
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)2.661e-13
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)4.617e-15
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)2e-14
Glyma.09G018700 hypothetical protein NA 1Chr09:1470411–1472672 (-)2.96e-11
Glyma.09G019300 hypothetical protein AT1G52520:FRS6:FAR1-related sequence 6 1Chr09:1514278–1517148 (+)3.343e-11
Glyma.09G019800 VAMP721D vesicle-associated membrane protein 721d NA 1Chr09:1540660–1547761 (+)5.256e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)3.546e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.283e-11
Glyma.09G110000 hypothetical protein NA 1Chr09:21593730–21602127 (+)6.355e-11
Glyma.09G186700 hypothetical protein AT1G20050:HYD1:C-8,7 sterol isomerase 1Chr09:41147591–41150204 (+)2.311e-11
Glyma.09G252100 hypothetical protein AT1G79790:FHY1:Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 1Chr09:47245185–47248478 (+)9.469e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)9.677e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)9.677e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)9.677e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)9.677e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)3.194e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)5.387e-13
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)1.721e-11
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)3.618e-11
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)3.618e-11
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)3.618e-11
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)3.618e-11
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)5.777e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)9.421e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)9.421e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)9.421e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)8.073e-13
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)8.073e-13
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)3.298e-11
Glyma.13G184000 hypothetical protein AT1G11120:AT1G11120:CTTNBP 2 amino-terminal-like protein 1Chr13:29775320–29779417 (+)6.479e-11
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)1.224e-11
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)4.025e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.155e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.982e-13
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)1.775e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)8.529e-15
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)1.634e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)1.154e-13
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)1.154e-13
Glyma.17G118900 hypothetical protein NA 1Chr17:9401882–9402864 (+)2.873e-12
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)5.608e-11
Glyma.18G262800 hypothetical protein NA 1Chr18:54832649–54833890 (+)4.74e-11
Glyma.18G263300 hypothetical protein AT5G39420:cdc2cAt:CDC2C 1Chr18:54865827–54872924 (-)3.719e-11
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)1.824e-13
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)2.71e-12
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)1.13e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)1.13e-11
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1134716–1143232 (+)2.365e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.814e-15
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.814e-15
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)7.121e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)2.096e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)4.863e-12