Overview Annotation GWAS Evidence Associated genes

P43039

Metabolite ID
P43039
Deionized mass
461.2433 Da
Average m/z
462.2502
Average RT
21.7856
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
151
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

151 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.01G045600 hypothetical protein NA 3Chr01:5242432–5245038 (-)1.244e-16
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 3Chr03:2423540–2428634 (-)3.205e-21
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 2Chr03:5113019–5121557 (+)3.827e-14
Glyma.03G135300 hypothetical protein NA 2Chr03:35092248–35097578 (+)2.983e-11
Glyma.05G164700 hypothetical protein NA 2Chr05:35543931–35549196 (-)1.002e-14
Glyma.06G168700 hypothetical protein AT5G63520:AT5G63520:F-box/LRR protein 2Chr06:14104416–14111842 (+)8.526e-12
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 2Chr11:3778152–3782174 (+)3.051e-19
Glyma.11G050600 hypothetical protein NA 2Chr11:3779988–3786583 (-)3.051e-19
Glyma.12G054700 hypothetical protein AT3G45140:LOX2:lipoxygenase 2 2Chr12:3949453–3957386 (-)9.314e-13
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.244e-12
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)2.833e-12
Glyma.16G147400 hypothetical protein NA 2Chr16:30817535–30821568 (+)1.205e-13
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)2.36e-12
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)1.269e-11
Glyma.01G045400 hypothetical protein NA 1Chr01:5140834–5144197 (-)1.145e-15
Glyma.01G045700 hypothetical protein AT1G69680:AT1G69680:ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction cen… 1Chr01:5265956–5271379 (-)1.244e-16
Glyma.01G047100 hypothetical protein AT1G14250:AT1G14250:GDA1/CD39 nucleoside phosphatase family protein__AT1G14230:AT1G14230:GDA1/CD39 nucleoside phosphata… 1Chr01:5503526–5511806 (+)1.207e-11
Glyma.01G047300 hypothetical protein AT1G27090:AT1G27090:glycine-rich protein 1Chr01:5514127–5517339 (+)1.363e-11
Glyma.01G047500 hypothetical protein NA 1Chr01:5528742–5532260 (-)1.363e-11
Glyma.01G047600 hypothetical protein NA 1Chr01:5545562–5545978 (+)1.262e-11
Glyma.01G175500 hypothetical protein AT3G50660:DWF4:Cytochrome P450 superfamily protein 1Chr01:51219681–51224948 (+)1.153e-13
Glyma.01G234100 hypothetical protein AT5G13270:RARE1:Pentatricopeptide repeat (PPR) superfamily protein 1Chr01:56022128–56026001 (+)4.645e-11
Glyma.02G115900 hypothetical protein AT1G26480:GRF12:ral regulatory factor 12 1Chr02:11280858–11285984 (+)7.594e-12
Glyma.03G021600 hypothetical protein AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2__AT2G44890:CYP704A1:cytochrome P450, family … 1Chr03:2240686–2246512 (-)2.776e-13
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)2.748e-15
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)1.066e-14
Glyma.03G022300 hypothetical protein AT3G60880:DHDPS1:dihydrodipicolinate synthase 1 1Chr03:2331191–2334210 (-)4.181e-12
Glyma.03G022500 hypothetical protein NA 1Chr03:2339702–2345448 (+)3.771e-11
Glyma.03G022900 hypothetical protein NA 1Chr03:2409690–2420328 (-)1.712e-11
Glyma.03G046200 hypothetical protein NA 1Chr03:5895672–5899267 (+)2.457e-12
Glyma.03G135600 hypothetical protein NA 1Chr03:35109981–35110632 (-)7.429e-13
Glyma.03G136000 hypothetical protein NA 1Chr03:35138670–35188160 (-)1.365e-13
Glyma.04G018000 hypothetical protein AT5G42310:AT5G42310:Pentatricopeptide repeat (PPR-like) superfamily protein 1Chr04:1402993–1407323 (-)2.093e-15
Glyma.04G084600 hypothetical protein NA 1Chr04:7171949–7173688 (+)5.777e-12
Glyma.04G085400 hypothetical protein AT5G25840:AT5G25840:DUF1677 family protein (DUF1677) 1Chr04:7274320–7276634 (-)2.716e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)6.244e-13
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)6.704e-12
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)2.092e-13
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)2.32e-13
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)2.32e-13
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.809e-16
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)4.946e-15
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)4.946e-15
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)4.946e-15
Glyma.05G224200 hypothetical protein NA 1Chr05:40307329–40312025 (+)1.119e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)6.189e-11
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)4.664e-11
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.242e-13
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)3.678e-15
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)3.678e-15
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)3.678e-15
Glyma.06G118500 hypothetical protein NA 1Chr06:9644661–9650144 (-)1.049e-18
Glyma.06G118800 hypothetical protein NA 1Chr06:9666921–9667708 (+)1.049e-18
Glyma.06G121000 hypothetical protein NA 1Chr06:9848464–9850191 (-)5.04e-18
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.295e-13
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.295e-13
Glyma.06G184100 hypothetical protein NA 1Chr06:15897746–15902462 (+)7.929e-11
Glyma.06G260900 hypothetical protein NA 1Chr06:44662225–44665728 (-)3.168e-11
Glyma.07G034300 hypothetical protein NA 1Chr07:2701469–2717662 (-)4.407e-11
Glyma.07G069600 hypothetical protein AT4G00370:ANTR2:Major facilitator superfamily protein 1Chr07:6307073–6313498 (-)6.592e-11
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)2.353e-12
Glyma.08G112600 hypothetical protein NA 1Chr08:8660670–8663379 (-)5.679e-12
Glyma.08G112700 hypothetical protein NA 1Chr08:8661027–8661191 (+)5.679e-12
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)1.465e-11
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)3.862e-12
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)4.584e-12
Glyma.09G018700 hypothetical protein NA 1Chr09:1470411–1472672 (-)1.322e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)4.078e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)5.954e-15
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)8.398e-13
Glyma.09G186700 hypothetical protein AT1G20050:HYD1:C-8,7 sterol isomerase 1Chr09:41147591–41150204 (+)2.236e-11
Glyma.09G187700 hypothetical protein AT3G24420:AT3G24420:alpha/beta-Hydrolases superfamily protein 1Chr09:41217358–41221592 (-)6.662e-13
Glyma.09G246700 hypothetical protein AT1G22840:CYTC-1:CYTOCHROME C-1 1Chr09:46835469–46838091 (-)2.988e-12
Glyma.09G250000 hypothetical protein NA 1Chr09:47096937–47099390 (-)1.525e-11
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)7.882e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)4.149e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)4.149e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)4.149e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)4.149e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)2.564e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)2.803e-12
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)7.711e-14
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)4.836e-17
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)3.051e-19
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)3.051e-19
Glyma.11G119600 hypothetical protein AT2G16130:PMT2:polyol/monosaccharide transporter 2 1Chr11:9127497–9129972 (-)1.043e-11
Glyma.11G125600 hypothetical protein AT2G46200:AT2G46200:U11/U12 small nuclear ribonucleoprotein 1Chr11:9540747–9545520 (-)4.461e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)6.2e-13
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)6.2e-13
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)6.2e-13
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)9.794e-13
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)9.794e-13
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)9.114e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)2.323e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.323e-11
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)8.101e-13
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)1.599e-12
Glyma.14G190300 hypothetical protein AT2G04240:XERICO:RING/U-box superfamily protein 1Chr14:45531920–45533895 (-)8.261e-14
Glyma.14G190400 hypothetical protein AT3G07650:COL9:CONSTANS-like 9 1Chr14:45536719–45544087 (-)8.261e-14
Glyma.14G197700 hypothetical protein AT5G58470:TAF15b:TBP-associated factor 15B 1Chr14:46291986–46298337 (+)3.472e-11
Glyma.14G198000 hypothetical protein NA 1Chr14:46334117–46336863 (+)3.472e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)4.508e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)5.127e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)8.024e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)5.127e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)5.128e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.534e-15
Glyma.15G152200 hypothetical protein NA 1Chr15:12632591–12637748 (+)3.114e-11
Glyma.15G152400 hypothetical protein NA 1Chr15:12641790–12646649 (+)3.114e-11
Glyma.15G152800 hypothetical protein NA 1Chr15:12669438–12671888 (+)3.114e-11
Glyma.15G152900 hypothetical protein AT4G15755:AT4G15755:Calcium-dependent lipid-binding (CaLB domain) family protein 1Chr15:12680146–12681864 (-)2.336e-11
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)3.373e-12
Glyma.15G257100 hypothetical protein AT1G56070:LOS1:Ribosomal protein S5/Elongation factor G/III/V family protein 1Chr15:48661607–48665946 (-)1.039e-12
Glyma.15G257500 hypothetical protein NA 1Chr15:48713244–48717192 (+)3.444e-11
Glyma.15G262400 hypothetical protein AT1G16310:AT1G16310:Cation efflux family protein__AT1G79520:AT1G79520:Cation efflux family protein 1Chr15:49495728–49499550 (+)1.418e-12
Glyma.15G263200 hypothetical protein AT1G70190:AT1G70190:ribosomal protein L7/L12 domain-containing protein 1Chr15:49628220–49631160 (+)2.539e-11
Glyma.15G263500 hypothetical protein AT1G79440:ALDH5F1:aldehyde dehydrogenase 5F1 1Chr15:49664672–49682418 (+)1.099e-11
Glyma.15G263600 hypothetical protein NA 1Chr15:49698401–49700796 (+)2.539e-11
Glyma.16G028100 hypothetical protein AT3G07570:AT3G07570:Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein 1Chr16:2725294–2733429 (-)2.587e-15
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)4.495e-12
Glyma.16G063600 hypothetical protein NA 1Chr16:6255512–6260421 (+)1.083e-12
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)1.511e-12
Glyma.16G139100 hypothetical protein NA 1Chr16:29632332–29634248 (-)3.203e-13
Glyma.16G144100 hypothetical protein NA 1Chr16:30432951–30434052 (-)8.815e-12
Glyma.16G144900 hypothetical protein AT2G23540:AT2G23540:GDSL-like Lipase/Acylhydrolase superfamily protein 1Chr16:30549575–30553059 (+)8.339e-12
Glyma.16G145200 hypothetical protein NA 1Chr16:30586018–30588859 (-)2.46e-11
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)6.006e-11
Glyma.16G146700 hypothetical protein NA 1Chr16:30755899–30759360 (-)6.006e-11
Glyma.16G147500 hypothetical protein NA 1Chr16:30832490–30834904 (+)3.432e-11
Glyma.16G147900 hypothetical protein NA 1Chr16:30864919–30872425 (+)9.804e-12
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)5.579e-12
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)1.677e-11
Glyma.16G196400 hypothetical protein AT5G07270:XBAT33:uncharacterized protein 1Chr16:35782198–35790495 (-)8.572e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)8.183e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)8.183e-11
Glyma.17G121800 hypothetical protein AT1G73965:CLE13:CLAVATA3/ESR-RELATED 13 1Chr17:9746590–9748712 (+)3.857e-14
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)8.309e-12
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)2.36e-12
Glyma.18G045000 hypothetical protein AT5G45130:RHA1:Ras small GTP-binding family protein 1Chr18:3889384–3895138 (-)3.161e-11
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)1.409e-15
Glyma.18G260700 hypothetical protein NA 1Chr18:54660451–54661757 (+)3.212e-13
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)8.33e-13
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)5.674e-11
Glyma.18G268000 hypothetical protein NA 1Chr18:55205656–55213313 (-)1.246e-13
Glyma.19G150000 hypothetical protein AT3G58060:AT3G58060:Cation efflux family protein 1Chr19:41018746–41025024 (+)1.531e-11
Glyma.19G187900 hypothetical protein AT2G36720:AT2G36720:Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein 1Chr19:44599748–44609219 (-)7.525e-14
Glyma.19G188200 hypothetical protein NA 1Chr19:44647446–44649620 (-)1.102e-14
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)7.43e-11
Glyma.20G101700 hypothetical protein AT5G08580:AT5G08580:Calcium-binding EF hand family protein 1Chr20:34467936–34475476 (-)6.969e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)1.141e-12
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)4.683e-11