Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P42955

Metabolite ID
P42955
Deionized mass
1072.5129 Da
Average m/z
1073.5296
Average RT
21.7358
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
50
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

50 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)1.689e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)2.416e-13
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)8.397e-12
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)8.422e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)8.422e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)6.11e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)4.101e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)7.823e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)6.885e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.076e-11
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)4.199e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.934e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.934e-11
Glyma.07G068200 hypothetical protein AT4G00310:EDA8:Putative membrane lipoprotein 1Chr07:6146155–6148036 (-)3.231e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)2.416e-13
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)2.416e-13
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)2.416e-13
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)2.416e-13
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)5.595e-13
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)5.44e-14
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)5.44e-14
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)4.646e-13
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)3.044e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)3.044e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)1.141e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)2.564e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.459e-12
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)1.459e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)1.459e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.203e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.774e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.203e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.203e-12
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)1.101e-11
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)5.02e-13
Glyma.16G112600 hypothetical protein NA 1Chr16:25015407–25020098 (-)1.187e-13
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)4.496e-13
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)1.689e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)1.689e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)1.689e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)1.689e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.256e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)6.216e-13
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)1.973e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)5.93e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)5.93e-12
Glyma.18G111800 hypothetical protein AT1G32910:AT1G32910:HXXXD-type acyl-transferase family protein 1Chr18:13278653–13284970 (+)1.488e-12
Glyma.18G266400 hypothetical protein AT3G29390:RIK:RS2-interacting KH protein 1Chr18:55076548–55086297 (+)8.164e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)2.357e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)7.461e-11