Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P42938

Metabolite ID
P42938
Deionized mass
973.0178 Da
Average m/z
974.0282
Average RT
21.7286
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
57
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

57 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 3Chr16:35170253–35173950 (-)1.237e-14
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)5.218e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)6.21e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)6.21e-12
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)2.68e-11
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)8.946e-11
Glyma.01G117000 hypothetical protein NA 1Chr01:40366281–40370122 (+)8.731e-11
Glyma.01G117200 hypothetical protein NA 1Chr01:40497525–40501709 (-)8.731e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)1.999e-11
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)9.33e-12
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)1.23e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)1.002e-11
Glyma.02G304500 hypothetical protein AT5G48300:ADG1:ADP glucose pyrophosphorylase 1 1Chr02:47950037–47954106 (+)1.725e-11
Glyma.07G021100 hypothetical protein NA 1Chr07:1647678–1650627 (+)5.106e-12
Glyma.07G021600 hypothetical protein AT5G48930:HCT:hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 1Chr07:1673827–1680014 (-)5.106e-12
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)1.35e-12
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 1Chr07:1697119–1698666 (+)2.269e-12
Glyma.11G037100 hypothetical protein AT2G35660:CTF2A:FAD/NAD(P)-binding oxidoreductase family protein 1Chr11:2678678–2681764 (-)3.545e-12
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)2.872e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)1.499e-11
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)4.444e-11
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)4.444e-11
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)4.444e-11
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)4.444e-11
Glyma.11G060700 hypothetical protein NA 1Chr11:4569714–4571506 (+)5.624e-11
Glyma.11G061000 hypothetical protein AT4G37210:AT4G37210:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr11:4576441–4579697 (+)1.033e-11
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)5.997e-14
Glyma.11G070700 hypothetical protein NA 1Chr11:5282926–5287258 (+)5.005e-12
Glyma.11G184400 hypothetical protein NA 1Chr11:25256684–25259757 (+)2.357e-11
Glyma.11G184600 hypothetical protein AT4G08960:AT4G08960:phosphotyrosyl phosphatase activator (PTPA) family protein 1Chr11:25265163–25267323 (-)5.453e-12
Glyma.11G184900 hypothetical protein AT3G44530:HIRA:histone chaperone HIRA-like protein 1Chr11:25289268–25298978 (+)5.453e-12
Glyma.11G185000 hypothetical protein AT4G33790:CER4:Jojoba acyl CoA reductase-related male sterility protein 1Chr11:25310949–25318127 (+)3.473e-11
Glyma.11G185200 hypothetical protein AT4G33790:CER4:Jojoba acyl CoA reductase-related male sterility protein 1Chr11:25361462–25369894 (+)3.473e-11
Glyma.11G185300 hypothetical protein AT3G44540:FAR4:fatty acid reductase 4 1Chr11:25389935–25398374 (-)3.473e-11
Glyma.11G185500 hypothetical protein AT5G20890:AT5G20890:TCP-1/cpn60 chaperonin family protein 1Chr11:25416977–25424958 (-)3.473e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)6.56e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)6.56e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)6.21e-12
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)4.887e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)8.202e-13
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)2.68e-11
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)2.79e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)4.971e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)9.94e-13
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)2.143e-13
Glyma.16G055000 hypothetical protein NA 1Chr16:5411241–5413143 (-)4.26e-11
Glyma.16G189500 hypothetical protein NA 1Chr16:35202920–35206459 (-)5.03e-13
Glyma.16G198800 hypothetical protein NA 1Chr16:36006373–36020152 (-)7.391e-11
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)5.218e-12
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)8.971e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)2.588e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)7.732e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)7.732e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)2.092e-11
Glyma.20G105500 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein__AT5G05320:AT5G05320:FAD/NAD(P)-binding oxidoreduc… 1Chr20:34813357–34815998 (-)1.567e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)7.597e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)8.63e-15