Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P42912

Metabolite ID
P42912
Deionized mass
1046.5512 Da
Average m/z
1047.5548
Average RT
21.7123
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
48
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

48 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 5Chr16:36856833–36863994 (-)7.666e-14
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)4.585e-12
Glyma.20G106300 hypothetical protein AT2G16950:TRN1:transportin 1 3Chr20:34868954–34885305 (-)8.129e-11
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 2Chr03:5113019–5121557 (+)3.324e-12
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 2Chr08:9065033–9071774 (-)3.896e-12
Glyma.01G117000 hypothetical protein NA 1Chr01:40366281–40370122 (+)5.466e-11
Glyma.01G117200 hypothetical protein NA 1Chr01:40497525–40501709 (-)5.466e-11
Glyma.02G151500 hypothetical protein AT2G47990:SWA1:transducin family protein / WD-40 repeat family protein 1Chr02:15586732–15588774 (+)2.142e-11
Glyma.02G203800 hypothetical protein AT4G30935:WRKY32:WRKY DNA-binding protein 32 1Chr02:38920714–38930381 (+)5.196e-11
Glyma.04G044600 hypothetical protein NA 1Chr04:3556928–3559705 (-)6.741e-12
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)1.703e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.614e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.913e-17
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.16e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.22e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.22e-12
Glyma.06G130300 hypothetical protein AT5G53080:AT5G53080:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr06:10709045–10716245 (-)8.1e-11
Glyma.06G285400 hypothetical protein AT1G06290:ACX3:acyl-CoA oxidase 3 1Chr06:47399250–47406151 (+)5.313e-11
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)3.896e-12
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)1.51e-11
Glyma.08G202000 hypothetical protein AT1G52150:ATHB-15:Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 1Chr08:16375907–16384294 (-)5.149e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)2.123e-11
Glyma.11G183200 hypothetical protein AT2G27500:AT2G27500:Glycosyl hydrolase superfamily protein 1Chr11:25070908–25075185 (-)6.728e-11
Glyma.15G111000 hypothetical protein AT1G62305:AT1G62305:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein__AT1G11940:AT1G11940:Cor… 1Chr15:8692505–8697919 (-)1.977e-11
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)1.119e-12
Glyma.16G057700 hypothetical protein AT3G27180:AT3G27180:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr16:5656328–5663040 (-)3.269e-11
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)1.206e-11
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)2.699e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)3.914e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)1.163e-11
Glyma.16G189000 hypothetical protein NA 1Chr16:35160485–35167548 (-)1.859e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)6.999e-11
Glyma.16G194000 hypothetical protein AT3G48900:AT3G48900:single-stranded DNA endonuclease family protein 1Chr16:35625666–35634395 (-)2.96e-14
Glyma.16G194100 hypothetical protein NA 1Chr16:35633570–35637343 (+)2.96e-14
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)9.469e-12
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)5.078e-13
Glyma.16G209000 hypothetical protein NA 1Chr16:36841786–36845498 (-)8.604e-11
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)4.585e-12
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)4.19e-14
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)4.19e-14
Glyma.17G219500 hypothetical protein NA 1Chr17:37109440–37111216 (-)1.285e-12
Glyma.18G055400 hypothetical protein NA 1Chr18:4824726–4828902 (+)1.873e-12
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)2.522e-11
Glyma.19G005200 hypothetical protein AT3G27640:AT3G27640:Transducin/WD40 repeat-like superfamily protein 1Chr19:472201–476152 (-)2.002e-11
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)9.82e-13
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)2.151e-12
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)6.065e-11
Glyma.20G107500 hypothetical protein AT2G16910:AMS:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr20:35011922–35015196 (-)8.145e-11