P42908
Metabolite ID
P42908
Deionized mass
1047.0463 Da
Average m/z
1048.0559
Average RT
21.7107
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
124
GWAS result file
Available
Candidate annotations
Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations
GWAS Evidence
Dataset: indexed GWAS records.
SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.
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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage
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Associated genes
124 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.
| Gene ID | Alias | Description | Arabidopsis ortholog | Supporting SNP records | Gene interval (1-based) | Minimum P |
|---|---|---|---|---|---|---|
| Glyma.16G145600 | hypothetical protein | AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… | 5 | Chr16:30652378–30659548 (+) | 1.962e-12 | |
| Glyma.03G135300 | hypothetical protein | NA | 3 | Chr03:35092248–35097578 (+) | 9.148e-11 | |
| Glyma.06G305700 | hypothetical protein | AT2G05710:ACO3:aconitase 3 | 3 | Chr06:49451501–49461369 (-) | 1.731e-11 | |
| Glyma.09G282900 | hypothetical protein | AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 | 2 | Chr09:49863377–49871270 (+) | 6.642e-12 | |
| Glyma.10G272800 | hypothetical protein | AT1G25350:OVA9:glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS | 2 | Chr10:49530856–49539222 (+) | 5.373e-11 | |
| Glyma.12G202400 | hypothetical protein | AT4G03415:PP2C52:Protein phosphatase 2C family protein | 2 | Chr12:36289704–36295084 (-) | 5.432e-15 | |
| Glyma.12G203700 | hypothetical protein | AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase | 2 | Chr12:36406747–36413696 (+) | 1.959e-12 | |
| Glyma.12G204400 | hypothetical protein | AT4G03560:TPC1:two-pore channel 1 | 2 | Chr12:36473422–36498915 (+) | 6.735e-14 | |
| Glyma.13G135700 | hypothetical protein | NA | 2 | Chr13:24812720–24818735 (+) | 1.445e-14 | |
| Glyma.13G135800 | hypothetical protein | AT5G02800:CDL1:Protein kinase superfamily protein | 2 | Chr13:24820151–24823999 (-) | 1.445e-14 | |
| Glyma.16G031600 | hypothetical protein | NA | 2 | Chr16:2964569–2985013 (+) | 7.688e-13 | |
| Glyma.16G105100 | hypothetical protein | NA | 2 | Chr16:21259552–21267517 (-) | 3.451e-12 | |
| Glyma.16G144700 | hypothetical protein | AT5G66960:AT5G66960:Prolyl oligopeptidase family protein | 2 | Chr16:30514629–30519598 (+) | 9.146e-12 | |
| Glyma.16G196900 | hypothetical protein | NA | 2 | Chr16:35841279–35846894 (-) | 5.718e-11 | |
| Glyma.01G021600 | hypothetical protein | AT5G65540:AT5G65540:transcription initiation factor TFIID subunit | 1 | Chr01:2189923–2194362 (-) | 2.832e-11 | |
| Glyma.01G169700 | hypothetical protein | AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 | 1 | Chr01:50715084–50719427 (-) | 2.466e-11 | |
| Glyma.01G169800 | hypothetical protein | AT4G36400:D2HGDH:FAD-linked oxidases family protein | 1 | Chr01:50726088–50733347 (-) | 2.466e-11 | |
| Glyma.01G173900 | hypothetical protein | NA | 1 | Chr01:51092004–51094319 (+) | 1.627e-11 | |
| Glyma.02G086900 | hypothetical protein | AT3G24130:AT3G24130:Pectin lyase-like superfamily protein | 1 | Chr02:7553127–7557516 (-) | 1.755e-11 | |
| Glyma.03G001500 | B15-3-5 | AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase | 1 | Chr03:169480–172727 (+) | 2.358e-12 | |
| Glyma.03G007800 | hypothetical protein | AT4G26010:AT4G26010:Peroxidase superfamily protein | 1 | Chr03:758088–760465 (-) | 7.461e-11 | |
| Glyma.03G021700 | hypothetical protein | AT2G45490:AUR3:ataurora3 | 1 | Chr03:2248429–2251737 (+) | 8.59e-12 | |
| Glyma.03G022100 | hypothetical protein | AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein | 1 | Chr03:2301675–2307263 (+) | 1.465e-13 | |
| Glyma.03G023000 | hypothetical protein | AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein | 1 | Chr03:2423540–2428634 (-) | 3.403e-12 | |
| Glyma.03G135200 | hypothetical protein | NA | 1 | Chr03:35070964–35078620 (+) | 9.148e-11 | |
| Glyma.03G135600 | hypothetical protein | NA | 1 | Chr03:35109981–35110632 (-) | 2.971e-12 | |
| Glyma.03G177700 | hypothetical protein | NA | 1 | Chr03:39046772–39051158 (+) | 1.102e-11 | |
| Glyma.04G158400 | hypothetical protein | AT3G42660:AT3G42660:transducin family protein / WD-40 repeat family protein | 1 | Chr04:38560905–38571145 (-) | 9.192e-13 | |
| Glyma.04G160700 | hypothetical protein | AT1G18610:AT1G18610:Galactose oxidase/kelch repeat superfamily protein | 1 | Chr04:39818871–39825716 (+) | 9.192e-13 | |
| Glyma.05G034000 | hypothetical protein | AT4G03400:DFL2:Auxin-responsive GH3 family protein | 1 | Chr05:2965889–2971412 (-) | 5.731e-12 | |
| Glyma.05G124700 | hypothetical protein | NA | 1 | Chr05:31807311–31817648 (+) | 4.104e-12 | |
| Glyma.05G126400 | hypothetical protein | NA | 1 | Chr05:31961493–31968339 (+) | 1.987e-11 | |
| Glyma.05G127200 | hypothetical protein | AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | 1 | Chr05:32014213–32017922 (-) | 4.497e-12 | |
| Glyma.05G127300 | hypothetical protein | AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B | 1 | Chr05:32021521–32025767 (-) | 6.869e-12 | |
| Glyma.05G127400 | hypothetical protein | AT1G29850:AT1G29850:double-stranded DNA-binding family protein | 1 | Chr05:32030115–32033716 (+) | 6.869e-12 | |
| Glyma.05G127500 | hypothetical protein | NA | 1 | Chr05:32041345–32049554 (+) | 6.374e-13 | |
| Glyma.05G127800 | hypothetical protein | AT4G18240:SS4:starch synthase 4 | 1 | Chr05:32125404–32138244 (+) | 7.051e-13 | |
| Glyma.05G127900 | SAD1 | AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein | 1 | Chr05:32139620–32141770 (-) | 7.051e-13 | |
| Glyma.05G128200 | hypothetical protein | AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein | 1 | Chr05:32158034–32162343 (-) | 7.051e-13 | |
| Glyma.05G137500 | hypothetical protein | NA | 1 | Chr05:33012282–33015297 (-) | 1.414e-12 | |
| Glyma.05G137600 | hypothetical protein | NA | 1 | Chr05:33018107–33020120 (-) | 3.87e-12 | |
| Glyma.05G182100 | hypothetical protein | NA | 1 | Chr05:37003489–37004855 (-) | 9.127e-11 | |
| Glyma.05G182500 | hypothetical protein | AT5G65210:TGA1:bZIP transcription factor family protein | 1 | Chr05:37029299–37037313 (+) | 2.295e-12 | |
| Glyma.05G182900 | hypothetical protein | NA | 1 | Chr05:37056753–37057349 (-) | 2.295e-12 | |
| Glyma.05G183100 | hypothetical protein | AT5G64940:ATH13:ABC2 homolog 13 | 1 | Chr05:37059525–37070146 (-) | 2.295e-12 | |
| Glyma.05G224200 | hypothetical protein | NA | 1 | Chr05:40307329–40312025 (+) | 6.431e-14 | |
| Glyma.05G236400 | hypothetical protein | AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 | 1 | Chr05:41274513–41279615 (-) | 1.034e-13 | |
| Glyma.05G236700 | hypothetical protein | AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein | 1 | Chr05:41301540–41310727 (+) | 1.24e-13 | |
| Glyma.05G237800 | hypothetical protein | AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 | 1 | Chr05:41406807–41413022 (-) | 8.703e-11 | |
| Glyma.06G084800 | hypothetical protein | NA | 1 | Chr06:6515571–6517480 (-) | 3.396e-14 | |
| Glyma.06G085000 | hypothetical protein | NA | 1 | Chr06:6524339–6529016 (-) | 3.396e-14 | |
| Glyma.06G085100 | hypothetical protein | NA | 1 | Chr06:6531956–6537295 (-) | 3.396e-14 | |
| Glyma.06G085200 | hypothetical protein | NA | 1 | Chr06:6540849–6545557 (+) | 3.141e-14 | |
| Glyma.06G261900 | hypothetical protein | NA | 1 | Chr06:44875369–44879702 (-) | 2.743e-12 | |
| Glyma.06G305300 | hypothetical protein | NA | 1 | Chr06:49431590–49435985 (-) | 1.731e-11 | |
| Glyma.06G305600 | hypothetical protein | NA | 1 | Chr06:49446542–49450635 (-) | 1.731e-11 | |
| Glyma.06G315100 | hypothetical protein | AT5G04930:ALA1:aminophospholipid ATPase 1 | 1 | Chr06:50401945–50408153 (+) | 4.259e-12 | |
| Glyma.06G316500 | hypothetical protein | AT2G47420:DIM1A:Ribosomal RNA adenine dimethylase family protein | 1 | Chr06:50531222–50538652 (-) | 9.045e-11 | |
| Glyma.07G013400 | hypothetical protein | AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | 1 | Chr07:1028243–1033837 (-) | 6.513e-12 | |
| Glyma.07G013500 | hypothetical protein | NA | 1 | Chr07:1036819–1041984 (-) | 6.513e-12 | |
| Glyma.07G071000 | hypothetical protein | AT4G00480:ATMYC1:basic helix-loop-helix (bHLH) DNA-binding superfamily protein | 1 | Chr07:6464646–6470484 (+) | 3.798e-12 | |
| Glyma.08G016700 | hypothetical protein | AT1G63840:AT1G63840:RING/U-box superfamily protein | 1 | Chr08:1330226–1331366 (-) | 2.56e-12 | |
| Glyma.08G199700 | hypothetical protein | AT5G50340:AT5G50340:DNA repair protein RadA-like protein | 1 | Chr08:16130591–16137703 (+) | 6.601e-12 | |
| Glyma.08G199800 | hypothetical protein | NA | 1 | Chr08:16137933–16142956 (-) | 6.601e-12 | |
| Glyma.08G199900 | hypothetical protein | AT3G16480:MPPalpha:mitochondrial processing peptidase alpha subunit | 1 | Chr08:16146033–16151741 (+) | 6.601e-12 | |
| Glyma.09G058900 | hypothetical protein | NA | 1 | Chr09:5397968–5404650 (-) | 1.443e-11 | |
| Glyma.09G060200 | hypothetical protein | AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein | 1 | Chr09:5571201–5579976 (-) | 3.592e-11 | |
| Glyma.09G060600 | hypothetical protein | AT3G28430:AT3G28430:CLEC16A-like protein | 1 | Chr09:5661672–5675338 (-) | 9.839e-11 | |
| Glyma.09G069400 | hypothetical protein | NA | 1 | Chr09:7055066–7058933 (+) | 4.847e-11 | |
| Glyma.09G082000 | hypothetical protein | NA | 1 | Chr09:9638564–9650178 (+) | 2.552e-13 | |
| Glyma.09G084300 | hypothetical protein | AT2G34680:AIR9:Outer arm dynein light chain 1 protein | 1 | Chr09:10129602–10197250 (-) | 1.69e-12 | |
| Glyma.09G186700 | hypothetical protein | AT1G20050:HYD1:C-8,7 sterol isomerase | 1 | Chr09:41147591–41150204 (+) | 3.381e-12 | |
| Glyma.09G270400 | hypothetical protein | NA | 1 | Chr09:48735991–48740879 (+) | 9.463e-11 | |
| Glyma.09G270500 | hypothetical protein | AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent | 1 | Chr09:48745649–48751140 (+) | 2.789e-11 | |
| Glyma.10G263800 | hypothetical protein | AT1G23010:LPR1:Cupredoxin superfamily protein | 1 | Chr10:48805999–48811533 (-) | 1.206e-11 | |
| Glyma.11G127100 | hypothetical protein | AT1G06040:STO:B-box zinc finger family protein | 1 | Chr11:9656242–9659517 (+) | 3.027e-11 | |
| Glyma.11G127200 | hypothetical protein | AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein | 1 | Chr11:9660434–9665570 (-) | 3.027e-11 | |
| Glyma.11G127300 | hypothetical protein | AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein | 1 | Chr11:9667918–9671917 (-) | 3.027e-11 | |
| Glyma.11G182600 | hypothetical protein | AT5G22400:AT5G22400:Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein | 1 | Chr11:24998933–25003549 (-) | 4.173e-11 | |
| Glyma.11G182700 | hypothetical protein | AT1G32250:AT1G32250:Calcium-binding EF-hand family protein | 1 | Chr11:25028353–25031056 (-) | 7.441e-11 | |
| Glyma.12G049300 | hypothetical protein | NA | 1 | Chr12:3538428–3539170 (-) | 1.914e-11 | |
| Glyma.12G108600 | hypothetical protein | NA | 1 | Chr12:9994609–9997302 (-) | 2.121e-12 | |
| Glyma.12G109500 | hypothetical protein | AT4G03415:PP2C52:Protein phosphatase 2C family protein | 1 | Chr12:10308026–10314332 (-) | 2.121e-12 | |
| Glyma.12G198700 | hypothetical protein | AT5G62990:emb1692:Ubiquitin carboxyl-terminal hydrolase family protein | 1 | Chr12:36001658–36004086 (+) | 4.635e-15 | |
| Glyma.12G202200 | hypothetical protein | AT2G20860:LIP1:lipoic acid synthase 1 | 1 | Chr12:36267599–36271584 (+) | 4.394e-16 | |
| Glyma.12G202300 | hypothetical protein | NA | 1 | Chr12:36275438–36276838 (+) | 4.394e-16 | |
| Glyma.12G202700 | hypothetical protein | AT2G20875:EPF1:epidermal patterning factor 1 | 1 | Chr12:36329374–36330905 (-) | 6.658e-11 | |
| Glyma.12G203600 | EXPB8 | AT2G20750:EXPB1:expansin B1 | 1 | Chr12:36390283–36394245 (-) | 6.936e-13 | |
| Glyma.12G204000 | hypothetical protein | AT1G03687:AT1G03687:DTW domain-containing protein | 1 | Chr12:36428558–36432835 (+) | 6.735e-14 | |
| Glyma.12G204600 | hypothetical protein | AT4G28310:AT4G28310:microtubule-associated protein | 1 | Chr12:36504234–36505245 (+) | 6.837e-12 | |
| Glyma.12G212300 | hypothetical protein | AT3G58710:WRKY69:WRKY DNA-binding protein 69 | 1 | Chr12:37131153–37134096 (+) | 3.663e-11 | |
| Glyma.13G135300 | hypothetical protein | NA | 1 | Chr13:24770681–24773826 (+) | 4.303e-13 | |
| Glyma.13G135400 | hypothetical protein | AT5G12130:PDE149:integral membrane TerC family protein | 1 | Chr13:24786242–24791938 (+) | 4.303e-13 | |
| Glyma.13G135500 | hypothetical protein | AT5G02780:GSTL1:glutathione transferase lambda 1 | 1 | Chr13:24798567–24801567 (+) | 1.445e-14 | |
| Glyma.13G203200 | hypothetical protein | AT3G52105:AT3G52105:DIS3-exonuclease-like protein | 1 | Chr13:31720004–31725252 (+) | 3.486e-14 | |
| Glyma.13G203300 | hypothetical protein | AT3G63530:BB:RING/U-box superfamily protein | 1 | Chr13:31727841–31735910 (-) | 3.486e-14 | |
| Glyma.13G203700 | hypothetical protein | NA | 1 | Chr13:31780982–31784218 (+) | 3.486e-14 | |
| Glyma.13G203900 | hypothetical protein | NA | 1 | Chr13:31793697–31796601 (-) | 2.311e-14 | |
| Glyma.14G066800 | hypothetical protein | NA | 1 | Chr14:5511222–5513114 (+) | 3.189e-14 | |
| Glyma.14G067800 | hypothetical protein | AT3G12380:ARP5:actin-related protein 5 | 1 | Chr14:5675792–5680343 (+) | 1.608e-13 | |
| Glyma.14G075900 | hypothetical protein | NA | 1 | Chr14:6362111–6364010 (-) | 7.292e-11 | |
| Glyma.15G035600 | hypothetical protein | AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III | 1 | Chr15:2830678–2835534 (+) | 1.555e-11 | |
| Glyma.15G124000 | hypothetical protein | NA | 1 | Chr15:9845097–9849312 (-) | 3.687e-13 | |
| Glyma.16G062500 | hypothetical protein | NA | 1 | Chr16:6099546–6105267 (-) | 3.467e-11 | |
| Glyma.16G105400 | hypothetical protein | AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein | 1 | Chr16:21357465–21364357 (-) | 4.057e-13 | |
| Glyma.16G106300 | hypothetical protein | AT5G23900:AT5G23900:Ribosomal protein L13e family protein | 1 | Chr16:21495147–21497932 (+) | 7.745e-12 | |
| Glyma.16G121500 | hypothetical protein | NA | 1 | Chr16:27007186–27010856 (+) | 3.339e-11 | |
| Glyma.16G143900 | hypothetical protein | NA | 1 | Chr16:30405681–30405977 (-) | 7.879e-11 | |
| Glyma.16G144000 | hypothetical protein | AT2G23450:AT2G23450:Protein kinase superfamily protein | 1 | Chr16:30413465–30418793 (-) | 7.879e-11 | |
| Glyma.16G144100 | hypothetical protein | NA | 1 | Chr16:30432951–30434052 (-) | 1.094e-11 | |
| Glyma.16G145100 | hypothetical protein | NA | 1 | Chr16:30578388–30581421 (-) | 4.905e-11 | |
| Glyma.16G208500 | EIF6 | AT3G55620:eIF6A:Translation initiation factor IF6 | 1 | Chr16:36806718–36809299 (+) | 5.796e-11 | |
| Glyma.16G209300 | hypothetical protein | NA | 1 | Chr16:36856833–36863994 (-) | 8.99e-12 | |
| Glyma.17G251200 | hypothetical protein | NA | 1 | Chr17:40605249–40607536 (+) | 2.772e-13 | |
| Glyma.18G251900 | hypothetical protein | AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… | 1 | Chr18:53855786–53862322 (-) | 6.299e-11 | |
| Glyma.18G266500 | hypothetical protein | NA | 1 | Chr18:55088284–55091427 (-) | 1.818e-13 | |
| Glyma.19G009400 | hypothetical protein | AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein | 1 | Chr19:885045–893253 (+) | 9.661e-12 | |
| Glyma.19G011600 | hypothetical protein | NA | 1 | Chr19:1111789–1116419 (+) | 2.04e-11 | |
| Glyma.19G011700 | hypothetical protein | AT3G01420:DOX1:Peroxidase superfamily protein | 1 | Chr19:1123637–1130946 (+) | 2.04e-11 | |
| Glyma.19G011800 | hypothetical protein | AT3G01420:DOX1:Peroxidase superfamily protein | 1 | Chr19:1134716–1143232 (+) | 3.935e-11 | |
| Glyma.19G012100 | hypothetical protein | AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 | 1 | Chr19:1155711–1161298 (-) | 7.425e-13 | |
| Glyma.19G012300 | hypothetical protein | NA | 1 | Chr19:1165111–1173031 (-) | 7.425e-13 | |
| Glyma.19G218100 | hypothetical protein | AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 | 1 | Chr19:47082133–47085750 (+) | 4.122e-12 | |
| Glyma.20G177600 | hypothetical protein | AT1G07900:LBD1:LOB domain-containing protein 1 | 1 | Chr20:41506046–41507720 (+) | 3.447e-11 |