Overview Annotation GWAS Evidence Associated genes

P42882

Metabolite ID
P42882
Deionized mass
1038.5429 Da
Average m/z
1039.5461
Average RT
21.6929
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
6
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

6 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G183400 hypothetical protein AT5G03406:AT5G03406:Class II aaRS and biotin synthetases superfamily protein__AT3G46100:HRS1:Histidyl-tRNA synthetase 1 1Chr03:39523755–39537009 (+)1.991e-12
Glyma.08G177400 hypothetical protein AT5G64290:DIT2.1:dicarboxylate transport 2.1 1Chr08:14213399–14217362 (+)3.319e-11
Glyma.11G244000 hypothetical protein NA 1Chr11:33776247–33780260 (+)1.872e-12
Glyma.11G246000 hypothetical protein AT1G24460:TNO1:TGN-related, localized SYP41 interacting protein 1Chr11:33921595–33928749 (-)1.872e-12
Glyma.18G074900 hypothetical protein AT1G55830:AT1G55830:coiled-coil protein 1Chr18:7097931–7102083 (+)3.647e-12
Glyma.18G075000 hypothetical protein AT4G26600:AT4G26600:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein__AT5G55920:OLI2:S-adenosyl… 1Chr18:7106464–7112929 (+)3.647e-12