Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P42873

Metabolite ID
P42873
Deionized mass
144.1134 Da
Average m/z
145.1206
Average RT
21.6873
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
24
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

24 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)5.65e-13
Glyma.16G144700 hypothetical protein AT5G66960:AT5G66960:Prolyl oligopeptidase family protein 2Chr16:30514629–30519598 (+)3.489e-15
Glyma.16G145100 hypothetical protein NA 2Chr16:30578388–30581421 (-)1.283e-17
Glyma.16G146700 hypothetical protein NA 2Chr16:30755899–30759360 (-)1.665e-12
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)6.113e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)2.1e-11
Glyma.05G137500 hypothetical protein NA 1Chr05:33012282–33015297 (-)2.882e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)6.459e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.237e-11
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)4.156e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)7.296e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)2.161e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)6.08e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)2.161e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)2.161e-12
Glyma.16G144100 hypothetical protein NA 1Chr16:30432951–30434052 (-)5.614e-16
Glyma.16G144200 hypothetical protein AT3G50380:AT3G50380:vacuolar protein sorting-associated protein, putative (DUF1162) 1Chr16:30434508–30475458 (-)8.367e-12
Glyma.16G144900 hypothetical protein AT2G23540:AT2G23540:GDSL-like Lipase/Acylhydrolase superfamily protein 1Chr16:30549575–30553059 (+)3.774e-11
Glyma.16G145200 hypothetical protein NA 1Chr16:30586018–30588859 (-)1.284e-11
Glyma.16G145500 hypothetical protein AT2G39200:MLO12:Seven transmembrane MLO family protein 1Chr16:30630177–30636253 (+)2.75e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)1.283e-17
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)1.665e-12
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)1.648e-16
Glyma.18G091600 hypothetical protein NA 1Chr18:9165090–9166656 (-)4.516e-12