P42788
Metabolite ID
P42788
Deionized mass
504.2444 Da
Average m/z
1009.4987
Average RT
21.6206
Adduct
[2M+H]+
Association scope
Overlapping genes only
Associated genes
81
GWAS result file
Available
Candidate annotations
Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations
GWAS Evidence
Dataset: indexed GWAS records.
SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.
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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage
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Associated genes
81 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.
| Gene ID | Alias | Description | Arabidopsis ortholog | Supporting SNP records | Gene interval (1-based) | Minimum P |
|---|---|---|---|---|---|---|
| Glyma.18G226300 | hypothetical protein | NA | 5 | Chr18:51471540–51498344 (+) | 1.202e-12 | |
| Glyma.16G209300 | hypothetical protein | NA | 4 | Chr16:36856833–36863994 (-) | 5.262e-13 | |
| Glyma.06G305700 | hypothetical protein | AT2G05710:ACO3:aconitase 3 | 3 | Chr06:49451501–49461369 (-) | 1.231e-12 | |
| Glyma.16G147900 | hypothetical protein | NA | 3 | Chr16:30864919–30872425 (+) | 8.714e-12 | |
| Glyma.08G117500 | hypothetical protein | AT4G18780:IRX1:cellulose synthase family protein | 2 | Chr08:9065033–9071774 (-) | 5.986e-12 | |
| Glyma.08G123500 | hypothetical protein | NA | 2 | Chr08:9494946–9505931 (-) | 3.77e-14 | |
| Glyma.08G338900 | hypothetical protein | NA | 2 | Chr08:45536950–45543029 (-) | 1.5e-13 | |
| Glyma.09G277300 | hypothetical protein | NA | 2 | Chr09:49271634–49276648 (-) | 2.607e-14 | |
| Glyma.16G208500 | EIF6 | AT3G55620:eIF6A:Translation initiation factor IF6 | 2 | Chr16:36806718–36809299 (+) | 1.495e-12 | |
| Glyma.01G022300 | hypothetical protein | NA | 1 | Chr01:2215383–2217438 (+) | 3.033e-11 | |
| Glyma.01G039700 | hypothetical protein | AT1G10385:AT1G10385:Vps51/Vps67 family (components of vesicular transport) protein | 1 | Chr01:4304713–4310259 (-) | 2.457e-11 | |
| Glyma.01G123900 | hypothetical protein | AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein | 1 | Chr01:42831758–42837350 (+) | 8.009e-11 | |
| Glyma.01G168800 | hypothetical protein | AT1G24430:AT1G24430:HXXXD-type acyl-transferase family protein | 1 | Chr01:50633986–50636589 (+) | 3.073e-12 | |
| Glyma.02G287700 | hypothetical protein | AT3G58780:SHP1:K-box region and MADS-box transcription factor family protein__AT2G42830:SHP2:K-box region and MADS-box … | 1 | Chr02:46797935–46805223 (-) | 1.004e-14 | |
| Glyma.03G023000 | hypothetical protein | AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein | 1 | Chr03:2423540–2428634 (-) | 7.33e-11 | |
| Glyma.03G147400 | hypothetical protein | NA | 1 | Chr03:36293698–36295294 (+) | 1.398e-11 | |
| Glyma.04G063900 | hypothetical protein | NA | 1 | Chr04:5310107–5313853 (+) | 7.364e-15 | |
| Glyma.05G124700 | hypothetical protein | NA | 1 | Chr05:31807311–31817648 (+) | 4.517e-13 | |
| Glyma.05G127300 | hypothetical protein | AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B | 1 | Chr05:32021521–32025767 (-) | 3.167e-13 | |
| Glyma.05G127400 | hypothetical protein | AT1G29850:AT1G29850:double-stranded DNA-binding family protein | 1 | Chr05:32030115–32033716 (+) | 3.166e-13 | |
| Glyma.05G127500 | hypothetical protein | NA | 1 | Chr05:32041345–32049554 (+) | 3.356e-14 | |
| Glyma.05G127800 | hypothetical protein | AT4G18240:SS4:starch synthase 4 | 1 | Chr05:32125404–32138244 (+) | 1.037e-13 | |
| Glyma.05G127900 | SAD1 | AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein | 1 | Chr05:32139620–32141770 (-) | 1.037e-13 | |
| Glyma.05G128200 | hypothetical protein | AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein | 1 | Chr05:32158034–32162343 (-) | 1.037e-13 | |
| Glyma.05G137500 | hypothetical protein | NA | 1 | Chr05:33012282–33015297 (-) | 9.573e-11 | |
| Glyma.05G137600 | hypothetical protein | NA | 1 | Chr05:33018107–33020120 (-) | 8.017e-14 | |
| Glyma.05G149900 | hypothetical protein | NA | 1 | Chr05:34389242–34393621 (-) | 6.899e-12 | |
| Glyma.05G236400 | hypothetical protein | AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 | 1 | Chr05:41274513–41279615 (-) | 3.559e-11 | |
| Glyma.05G236700 | hypothetical protein | AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein | 1 | Chr05:41301540–41310727 (+) | 1.032e-15 | |
| Glyma.05G237800 | hypothetical protein | AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 | 1 | Chr05:41406807–41413022 (-) | 1.35e-12 | |
| Glyma.06G037300 | hypothetical protein | AT2G26540:HEMD:uroporphyrinogen-III synthase family protein | 1 | Chr06:2861369–2870869 (-) | 1.549e-11 | |
| Glyma.06G037800 | hypothetical protein | NA | 1 | Chr06:2894530–2896325 (-) | 4.735e-11 | |
| Glyma.06G038900 | hypothetical protein | AT5G42700:AT5G42700:AP2/B3-like transcriptional factor family protein | 1 | Chr06:2943383–2947586 (+) | 2.535e-11 | |
| Glyma.06G039000 | hypothetical protein | AT1G47380:AT1G47380:Protein phosphatase 2C family protein | 1 | Chr06:2949704–2954653 (+) | 1.265e-11 | |
| Glyma.06G079400 | hypothetical protein | NA | 1 | Chr06:6105463–6107101 (+) | 7.949e-11 | |
| Glyma.06G305300 | hypothetical protein | NA | 1 | Chr06:49431590–49435985 (-) | 1.231e-12 | |
| Glyma.06G305600 | hypothetical protein | NA | 1 | Chr06:49446542–49450635 (-) | 1.231e-12 | |
| Glyma.08G115700 | hypothetical protein | AT1G29120:AT1G29120:Hydrolase-like protein family | 1 | Chr08:8868075–8876513 (+) | 4.588e-11 | |
| Glyma.08G118400 | hypothetical protein | AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein | 1 | Chr08:9147404–9153858 (-) | 5.985e-12 | |
| Glyma.08G119300 | hypothetical protein | AT1G29330:ERD2:ER lumen protein retaining receptor family protein | 1 | Chr08:9198213–9201688 (-) | 5.16e-12 | |
| Glyma.08G122200 | hypothetical protein | NA | 1 | Chr08:9416766–9429995 (-) | 3.77e-14 | |
| Glyma.08G122300 | hypothetical protein | AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 | 1 | Chr08:9435391–9437279 (+) | 3.77e-14 | |
| Glyma.08G122500 | hypothetical protein | NA | 1 | Chr08:9441329–9445315 (-) | 3.77e-14 | |
| Glyma.08G122700 | hypothetical protein | AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) | 1 | Chr08:9452604–9458932 (+) | 3.77e-14 | |
| Glyma.08G150100 | hypothetical protein | AT2G44450:BGLU15:beta glucosidase 15 | 1 | Chr08:11525692–11536927 (+) | 6.687e-11 | |
| Glyma.08G338200 | hypothetical protein | NA | 1 | Chr08:45509289–45511145 (+) | 1.5e-13 | |
| Glyma.08G338600 | hypothetical protein | NA | 1 | Chr08:45522321–45523727 (-) | 1.5e-13 | |
| Glyma.08G338700 | hypothetical protein | NA | 1 | Chr08:45527941–45529335 (-) | 6.744e-12 | |
| Glyma.09G082000 | hypothetical protein | NA | 1 | Chr09:9638564–9650178 (+) | 5.67e-11 | |
| Glyma.09G280300 | hypothetical protein | AT2G38480:AT2G38480:Uncharacterized protein family (UPF0497) | 1 | Chr09:49547489–49550731 (-) | 1.189e-11 | |
| Glyma.10G156300 | hypothetical protein | AT3G05210:ERCC1:nucleotide repair protein | 1 | Chr10:39053531–39057116 (-) | 3.167e-11 | |
| Glyma.12G028800 | hypothetical protein | AT1G50300:TAF15:TBP-associated factor 15 | 1 | Chr12:2148313–2153234 (-) | 4.775e-11 | |
| Glyma.12G079700 | hypothetical protein | AT1G08110:AT1G08110:lactoylglutathione lyase family protein / glyoxalase I family protein | 1 | Chr12:6241940–6246776 (+) | 3.245e-12 | |
| Glyma.12G202200 | hypothetical protein | AT2G20860:LIP1:lipoic acid synthase 1 | 1 | Chr12:36267599–36271584 (+) | 1.543e-12 | |
| Glyma.12G202300 | hypothetical protein | NA | 1 | Chr12:36275438–36276838 (+) | 1.543e-12 | |
| Glyma.12G202400 | hypothetical protein | AT4G03415:PP2C52:Protein phosphatase 2C family protein | 1 | Chr12:36289704–36295084 (-) | 4.938e-11 | |
| Glyma.13G080300 | hypothetical protein | AT1G77600:AT1G77600:ARM repeat superfamily protein | 1 | Chr13:18678063–18702488 (-) | 1.48e-11 | |
| Glyma.13G095000 | hypothetical protein | NA | 1 | Chr13:21005327–21006774 (-) | 3.319e-11 | |
| Glyma.13G170600 | ALDH2B6 | aldehyde dehydrogenase family 2 member B6 | AT1G23800:ALDH2B7:aldehyde dehydrogenase 2B7 | 1 | Chr13:28436396–28440865 (-) | 1.954e-11 |
| Glyma.13G203900 | hypothetical protein | NA | 1 | Chr13:31793697–31796601 (-) | 3.446e-11 | |
| Glyma.14G087900 | hypothetical protein | NA | 1 | Chr14:7887761–7897469 (+) | 1.872e-12 | |
| Glyma.15G035600 | hypothetical protein | AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III | 1 | Chr15:2830678–2835534 (+) | 1.837e-13 | |
| Glyma.16G031600 | hypothetical protein | NA | 1 | Chr16:2964569–2985013 (+) | 1.428e-12 | |
| Glyma.16G105100 | hypothetical protein | NA | 1 | Chr16:21259552–21267517 (-) | 4.64e-11 | |
| Glyma.16G105400 | hypothetical protein | AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein | 1 | Chr16:21357465–21364357 (-) | 2.247e-11 | |
| Glyma.16G106300 | hypothetical protein | AT5G23900:AT5G23900:Ribosomal protein L13e family protein | 1 | Chr16:21495147–21497932 (+) | 9.026e-12 | |
| Glyma.16G145100 | hypothetical protein | NA | 1 | Chr16:30578388–30581421 (-) | 1.016e-11 | |
| Glyma.16G145200 | hypothetical protein | NA | 1 | Chr16:30586018–30588859 (-) | 2.079e-12 | |
| Glyma.16G145600 | hypothetical protein | AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… | 1 | Chr16:30652378–30659548 (+) | 1.016e-11 | |
| Glyma.16G147000 | hypothetical protein | NA | 1 | Chr16:30773803–30777822 (-) | 8.348e-11 | |
| Glyma.16G147400 | hypothetical protein | NA | 1 | Chr16:30817535–30821568 (+) | 6.736e-11 | |
| Glyma.16G207900 | hypothetical protein | AT5G08450:AT5G08450:zinc finger CCCH domain protein | 1 | Chr16:36754888–36763450 (+) | 1.646e-11 | |
| Glyma.16G209400 | hypothetical protein | AT1G17840:ABCG11:white-brown complex-like protein | 1 | Chr16:36871978–36878151 (-) | 1.061e-11 | |
| Glyma.16G210300 | hypothetical protein | AT1G73340:AT1G73340:Cytochrome P450 superfamily protein | 1 | Chr16:36943073–36948828 (+) | 3.402e-11 | |
| Glyma.16G210400 | hypothetical protein | AT1G73350:AT1G73350:ankyrin repeat protein | 1 | Chr16:36949685–36953467 (+) | 3.402e-11 | |
| Glyma.18G266200 | hypothetical protein | NA | 1 | Chr18:55065716–55066843 (-) | 3.597e-15 | |
| Glyma.18G283900 | hypothetical protein | AT1G48360:AT1G48360:zinc ion binding/nucleic acid binding/hydrolase | 1 | Chr18:56453767–56460708 (+) | 9.568e-11 | |
| Glyma.18G284300 | hypothetical protein | AT1G27980:DPL1:dihydrosphingosine phosphate lyase | 1 | Chr18:56489793–56496952 (+) | 3.189e-11 | |
| Glyma.19G128200 | hypothetical protein | NA | 1 | Chr19:38739769–38743404 (+) | 4.616e-11 | |
| Glyma.20G109800 | hypothetical protein | AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein | 1 | Chr20:35213258–35219502 (+) | 9.395e-11 | |
| Glyma.20G110000 | hypothetical protein | AT3G54260:TBL36:TRICHOME BIREFRINGENCE-LIKE 36 | 1 | Chr20:35229423–35231861 (+) | 6.854e-11 |