Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P42720

Metabolite ID
P42720
Deionized mass
304.0765 Da
Average m/z
305.0840
Average RT
21.6008
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
44
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

44 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 3Chr03:5113019–5121557 (+)2.062e-16
Glyma.15G216700 hypothetical protein NA 3Chr15:35649229–35652466 (-)2.879e-13
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)3.155e-11
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)7.444e-12
Glyma.15G216900 hypothetical protein NA 2Chr15:35680524–35686654 (-)2.879e-13
Glyma.15G223600 hypothetical protein NA 2Chr15:40694344–40709542 (+)8.12e-11
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 2Chr16:24626024–24635513 (+)3.544e-11
Glyma.03G136100 hypothetical protein NA 1Chr03:35199503–35203392 (-)1.78e-11
Glyma.03G145600 hypothetical protein NA 1Chr03:36103398–36107031 (+)7.363e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)4.397e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.703e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)3.351e-12
Glyma.06G126400 hypothetical protein AT5G53150:AT5G53150:DnaJ heat shock amino-terminal domain protein 1Chr06:10356650–10362151 (-)6.193e-11
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)8.608e-11
Glyma.07G075000 hypothetical protein AT5G60990:AT5G60990:DEA(D/H)-box RNA helicase family protein 1Chr07:6821674–6829551 (-)9.693e-11
Glyma.07G075300 hypothetical protein NA 1Chr07:6843882–6845602 (-)9.693e-11
Glyma.07G129600 hypothetical protein AT4G29670:ACHT2:atypical CYS HIS rich thioredoxin 2 1Chr07:15404178–15410144 (-)8.842e-11
Glyma.08G149500 hypothetical protein NA 1Chr08:11460264–11465243 (-)7.717e-12
Glyma.08G150400 hypothetical protein NA 1Chr08:11565265–11571675 (+)4.757e-11
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)1.274e-11
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)1.274e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)1.186e-14
Glyma.10G263800 hypothetical protein AT1G23010:LPR1:Cupredoxin superfamily protein 1Chr10:48805999–48811533 (-)9.612e-12
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)2.954e-11
Glyma.11G241300 hypothetical protein AT4G39990:RABA4B:RAB GTPase homolog A4B 1Chr11:33552339–33555298 (+)2.268e-12
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)1.972e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)7.444e-12
Glyma.15G212800 hypothetical protein AT4G16340:SPK1:guanyl-nucleotide exchange factors;GTPase binding;GTP binding protein 1Chr15:33408140–33467420 (+)9.104e-14
Glyma.15G216800 hypothetical protein NA 1Chr15:35673556–35678305 (-)7.97e-12
Glyma.15G217100 hypothetical protein NA 1Chr15:35830853–35832075 (-)2.879e-13
Glyma.15G219200 hypothetical protein NA 1Chr15:37859579–37901021 (-)3.725e-11
Glyma.15G224500 hypothetical protein NA 1Chr15:40874637–40886928 (-)3.954e-11
Glyma.15G232600 hypothetical protein NA 1Chr15:43719004–43723574 (+)8.152e-11
Glyma.15G233600 hypothetical protein NA 1Chr15:43971478–43972713 (+)1.016e-11
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)3.544e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)3.155e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)3.155e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)3.155e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)3.155e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.75e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)1.096e-11
Glyma.18G072800 hypothetical protein AT1G55760:AT1G55760:BTB/POZ domain-containing protein 1Chr18:6873417–6878947 (-)4.772e-11
Glyma.18G111800 hypothetical protein AT1G32910:AT1G32910:HXXXD-type acyl-transferase family protein 1Chr18:13278653–13284970 (+)5.338e-11
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)1.048e-13