Overview Annotation GWAS Evidence Associated genes

P42682

Metabolite ID
P42682
Deionized mass
252.9329 Da
Average m/z
253.9410
Average RT
21.5886
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
5
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

5 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G285400 hypothetical protein AT1G06290:ACX3:acyl-CoA oxidase 3 1Chr06:47399250–47406151 (+)9.475e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)9.066e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)3.946e-11
Glyma.20G129900 hypothetical protein NA 1Chr20:37091399–37092697 (-)6.11e-11
Glyma.20G179000 hypothetical protein NA 1Chr20:41630613–41632249 (-)3.86e-11