Overview Annotation GWAS Evidence Associated genes

P42660

Metabolite ID
P42660
Deionized mass
252.6110 Da
Average m/z
253.6175
Average RT
21.5811
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
5
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

5 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)6.339e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)6.338e-11
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)4.071e-11
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)5.15e-11
Glyma.16G146700 hypothetical protein NA 1Chr16:30755899–30759360 (-)5.15e-11