Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P42521

Metabolite ID
P42521
Deionized mass
338.2406 Da
Average m/z
339.2470
Average RT
21.4384
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
53
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

53 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)1.369e-12
Glyma.06G183500 hypothetical protein AT5G50000:AT5G50000:Protein kinase superfamily protein 2Chr06:15828917–15834067 (+)6.907e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)1.622e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)1.622e-12
Glyma.02G115900 hypothetical protein AT1G26480:GRF12:ral regulatory factor 12 1Chr02:11280858–11285984 (+)8.587e-11
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)1.878e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)2.038e-11
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)5.894e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)3.792e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)4.743e-15
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)6.735e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)3.391e-11
Glyma.05G164700 hypothetical protein NA 1Chr05:35543931–35549196 (-)1.898e-12
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)2.604e-13
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)2.604e-13
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)2.604e-13
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)1.369e-12
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)1.369e-12
Glyma.07G035100 hypothetical protein NA 1Chr07:2810396–2815857 (+)9.842e-11
Glyma.07G035600 hypothetical protein AT1G67120:AT1G67120:midasin-like protein 1Chr07:2836189–2887535 (+)9.842e-11
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)8.594e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)7.472e-14
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)2.138e-12
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)2.918e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)2.918e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)2.918e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)2.918e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)2.041e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.355e-12
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)1.256e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)1.675e-11
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)6.067e-11
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)6.067e-11
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)6.067e-11
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)6.067e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)2.082e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)2.082e-11
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)3.667e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)6.013e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)7.514e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)6.013e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)6.013e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.285e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)9.696e-13
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)1.558e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)4.343e-13
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)4.343e-13
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)1.32e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)2.416e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)5.327e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.361e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.361e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)2.612e-12