Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P42427

Metabolite ID
P42427
Deionized mass
545.2214 Da
Average m/z
546.2296
Average RT
21.3832
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
55
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

55 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.18G226300 hypothetical protein NA 4Chr18:51471540–51498344 (+)3.016e-11
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)9.021e-12
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 2Chr03:5113019–5121557 (+)7.325e-15
Glyma.03G145600 hypothetical protein NA 2Chr03:36103398–36107031 (+)3.443e-12
Glyma.03G145900 hypothetical protein AT5G06700:AT5G06700:trichome birefringence-like protein (DUF828) 2Chr03:36127816–36131230 (-)6.426e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)2.075e-11
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)2.146e-11
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 2Chr18:47102746–47129707 (+)4.737e-12
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)5.37e-13
Glyma.02G088200 hypothetical protein AT1G64680:AT1G64680:beta-carotene isomerase D27 1Chr02:7717452–7725490 (+)5.642e-11
Glyma.02G091800 hypothetical protein NA 1Chr02:8129908–8133455 (+)4.53e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)7.433e-13
Glyma.03G124500 hypothetical protein NA 1Chr03:33758928–33762195 (+)8.193e-12
Glyma.03G145700 hypothetical protein AT3G58030:AT3G58030:RING/U-box superfamily protein 1Chr03:36109689–36112241 (+)1.059e-13
Glyma.03G145800 hypothetical protein AT5G06710:HAT14:homeobox leucine zipper protein 1Chr03:36122932–36125124 (+)7.763e-11
Glyma.03G147400 hypothetical protein NA 1Chr03:36293698–36295294 (+)1.129e-11
Glyma.04G063900 hypothetical protein NA 1Chr04:5310107–5313853 (+)3.889e-13
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)1.084e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)7.714e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.239e-15
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.127e-18
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)5.698e-15
Glyma.06G076100 hypothetical protein NA 1Chr06:5893905–5901500 (+)6.918e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.685e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.685e-11
Glyma.06G303700 hypothetical protein AT1G05230:HDG2:homeodomain GLABROUS 2 1Chr06:49315918–49324382 (+)1.977e-11
Glyma.06G303800 hypothetical protein AT1G05220:AT1G05220:Transmembrane protein 97, Putative__AT2G32380:AT2G32380:Transmembrane protein 97, Putative 1Chr06:49328417–49330906 (-)1.977e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)9.713e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)2.075e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)2.075e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)2.075e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)2.075e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)1.277e-11
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)8.948e-11
Glyma.11G024800 hypothetical protein NA 1Chr11:1754343–1759398 (+)1.988e-12
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)5.452e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)5.452e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)2.591e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.591e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)8.983e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)2.191e-12
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)2.146e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)9.021e-12
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)9.021e-12
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)9.021e-12
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)9.021e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)2.377e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)1.234e-12
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)3.678e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)3.678e-11
Glyma.16G219700 hypothetical protein NA 1Chr16:37690133–37695529 (-)3.779e-11
Glyma.18G072800 hypothetical protein AT1G55760:AT1G55760:BTB/POZ domain-containing protein 1Chr18:6873417–6878947 (-)6.013e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)1.777e-12
Glyma.18G266200 hypothetical protein NA 1Chr18:55065716–55066843 (-)5.455e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)2.772e-12