P42407
Metabolite ID
P42407
Deionized mass
539.1398 Da
Average m/z
540.1469
Average RT
21.3744
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
13
GWAS result file
Available
Candidate annotations
Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations
GWAS Evidence
Dataset: indexed GWAS records.
SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.
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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage
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Associated genes
13 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.
| Gene ID | Alias | Description | Arabidopsis ortholog | Supporting SNP records | Gene interval (1-based) | Minimum P |
|---|---|---|---|---|---|---|
| Glyma.18G104400 | hypothetical protein | AT2G42790:CSY3:citrate synthase 3 | 2 | Chr18:11482927–11506669 (-) | 6.188e-19 | |
| Glyma.01G037200 | hypothetical protein | NA | 1 | Chr01:3946315–3948100 (-) | 6.39e-12 | |
| Glyma.03G022100 | hypothetical protein | AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein | 1 | Chr03:2301675–2307263 (+) | 4.07e-11 | |
| Glyma.08G136700 | hypothetical protein | NA | 1 | Chr08:10457207–10460163 (-) | 9.949e-11 | |
| Glyma.10G263800 | hypothetical protein | AT1G23010:LPR1:Cupredoxin superfamily protein | 1 | Chr10:48805999–48811533 (-) | 3.392e-11 | |
| Glyma.12G001400 | hypothetical protein | AT1G72090:AT1G72090:Methylthiotransferase | 1 | Chr12:113763–118480 (+) | 1.112e-11 | |
| Glyma.12G001600 | PM27 | seed maturation protein PM27 | AT1G22600:AT1G22600:Late embryosis abundant protein (LEA) family protein__AT1G72100:AT1G72100:late embryosis abundant d… | 1 | Chr12:127545–128932 (+) | 1.112e-11 |
| Glyma.12G001700 | hypothetical protein | AT1G22570:AT1G22570:Major facilitator superfamily protein__AT1G22550:AT1G22550:Major facilitator superfamily protein | 1 | Chr12:132389–134935 (+) | 1.112e-11 | |
| Glyma.14G094900 | hypothetical protein | AT1G60960:IRT3:iron regulated transporter 3 | 1 | Chr14:8824846–8827258 (-) | 2.672e-13 | |
| Glyma.18G102100 | hypothetical protein | AT1G50900:GDC1:Ankyrin repeat family protein | 1 | Chr18:10822751–10828225 (+) | 6.188e-19 | |
| Glyma.18G104600 | hypothetical protein | AT2G42810:PP5.2:protein phosphatase 5.2 | 1 | Chr18:11541115–11551882 (-) | 6.188e-19 | |
| Glyma.18G104700 | hypothetical protein | NA | 1 | Chr18:11598036–11603174 (+) | 6.188e-19 | |
| Glyma.20G217100 | hypothetical protein | AT1G64640:ENODL8:early nodulin-like protein 8 | 1 | Chr20:45278452–45280126 (-) | 8.214e-11 |