Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P42351

Metabolite ID
P42351
Deionized mass
312.1939 Da
Average m/z
313.2030
Average RT
21.3534
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
79
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

79 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 3Chr18:47102746–47129707 (+)7.98e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)2.366e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)2.366e-13
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)1.672e-11
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)1.354e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)6.604e-12
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1134716–1143232 (+)2.069e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)4.155e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)4.155e-11
Glyma.02G081600 hypothetical protein NA 1Chr02:7054190–7055955 (-)1.949e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)1.524e-12
Glyma.02G091800 hypothetical protein NA 1Chr02:8129908–8133455 (+)3.814e-13
Glyma.02G138200 hypothetical protein NA 1Chr02:14307786–14310106 (-)4.985e-12
Glyma.02G303600 hypothetical protein NA 1Chr02:47883626–47887124 (-)4.829e-11
Glyma.02G303700 hypothetical protein NA 1Chr02:47892900–47896207 (+)4.829e-11
Glyma.02G304000 hypothetical protein AT1G51350:AT1G51350:ARM repeat superfamily protein 1Chr02:47908136–47915999 (-)4.829e-11
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)3.889e-11
Glyma.03G002100 hypothetical protein AT5G01930:MAN6:Glycosyl hydrolase superfamily protein 1Chr03:211934–216522 (+)6.305e-11
Glyma.03G002400 hypothetical protein AT5G25780:EIF3B-2:eukaryotic translation initiation factor 3B-2 1Chr03:234217–238375 (-)6.305e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)7.306e-11
Glyma.04G190200 hypothetical protein AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 1Chr04:46086785–46089618 (-)1.984e-12
Glyma.05G125800 hypothetical protein AT2G34790:MEE23:FAD-binding Berberine family protein 1Chr05:31926976–31929133 (+)1.567e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.303e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.143e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)2.598e-14
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)2.598e-14
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)5.087e-11
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)2.495e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)3.364e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)1.252e-11
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)8.806e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)9.754e-13
Glyma.08G338900 hypothetical protein NA 1Chr08:45536950–45543029 (-)2.726e-12
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)7.121e-11
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)7.121e-11
Glyma.10G028500 hypothetical protein NA 1Chr10:2476846–2478953 (+)4.949e-14
Glyma.10G028700 hypothetical protein AT1G03090:MCCA:methylcrotonyl-CoA carboxylase alpha chain 1Chr10:2485817–2497071 (-)4.949e-14
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)3.391e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)3.391e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)9.464e-13
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)9.464e-13
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)2.366e-13
Glyma.13G170600 ALDH2B6 aldehyde dehydrogenase family 2 member B6 AT1G23800:ALDH2B7:aldehyde dehydrogenase 2B7 1Chr13:28436396–28440865 (-)7.321e-12
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)8.836e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)8.836e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)8.836e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)7.031e-13
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)4.896e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)2.892e-12
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)5.658e-12
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)1.672e-11
Glyma.15G070100 hypothetical protein AT1G61140:EDA16:SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 1Chr15:5355553–5364428 (+)2.364e-12
Glyma.15G071600 hypothetical protein AT4G21660:AT4G21660:proline-rich spliceosome-associated (PSP) family protein 1Chr15:5481672–5488866 (-)2.364e-12
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)9.794e-11
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)9.794e-11
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)8.616e-12
Glyma.16G051100 hypothetical protein NA 1Chr16:4896279–4898219 (-)2.026e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)4.377e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)7.5e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)5.158e-11
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)7.448e-12
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)3.395e-13
Glyma.16G139100 hypothetical protein NA 1Chr16:29632332–29634248 (-)7.443e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)5.688e-12
Glyma.17G121800 hypothetical protein AT1G73965:CLE13:CLAVATA3/ESR-RELATED 13 1Chr17:9746590–9748712 (+)4.638e-12
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)1.354e-11
Glyma.17G251200 hypothetical protein NA 1Chr17:40605249–40607536 (+)2.037e-11
Glyma.18G026200 hypothetical protein AT2G40150:TBL28:TRICHOME BIREFRINGENCE-LIKE 28__AT3G55990:ESK1:trichome birefringence-like protein (DUF828) 1Chr18:1953183–1957001 (-)9.761e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)3.282e-12
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 1Chr18:57674222–57678396 (+)2.4e-12
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)3.538e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.246e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.246e-13
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)2.286e-12
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)9.372e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)2.187e-12
Glyma.20G098600 hypothetical protein AT4G01470:TIP1;3:tonoplast intrinsic protein 1;3 1Chr20:34184591–34191923 (+)9.627e-11
Glyma.20G099900 hypothetical protein AT5G23390:AT5G23390:polygalacturonase inhibitor (DUF639) 1Chr20:34312783–34318966 (+)1.526e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)2.348e-11