Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P42261

Metabolite ID
P42261
Deionized mass
1055.5436 Da
Average m/z
1056.5509
Average RT
21.2566
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
63
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

63 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G196900 hypothetical protein NA 4Chr16:35841279–35846894 (-)9.997e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)4.174e-14
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)4.174e-14
Glyma.16G177400 hypothetical protein NA 2Chr16:33858373–33865573 (+)2.131e-11
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 2Chr16:35831912–35835153 (+)1.995e-12
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)3.187e-11
Glyma.01G010400 SLTI248 DEAD-box RNA helicase AT1G31970:STRS1:DEA(D/H)-box RNA helicase family protein 1Chr01:1009200–1013846 (+)1.453e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)1.188e-11
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)4.312e-11
Glyma.03G016900 hypothetical protein NA 1Chr03:1702419–1707451 (+)2.103e-11
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)4.111e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.267e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.921e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.233e-15
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.185e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)8.019e-12
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)2.211e-11
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)7.827e-11
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)7.82e-13
Glyma.07G068200 hypothetical protein AT4G00310:EDA8:Putative membrane lipoprotein 1Chr07:6146155–6148036 (-)6.322e-12
Glyma.07G075000 hypothetical protein AT5G60990:AT5G60990:DEA(D/H)-box RNA helicase family protein 1Chr07:6821674–6829551 (-)4.824e-11
Glyma.07G075300 hypothetical protein NA 1Chr07:6843882–6845602 (-)4.824e-11
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)1.208e-14
Glyma.09G251800 hypothetical protein AT1G65380:CLV2:Leucine-rich repeat (LRR) family protein 1Chr09:47220796–47224266 (+)8.119e-14
Glyma.09G252000 hypothetical protein AT2G40730:CTEXP:kinase family with ARM repeat domain-containing protein 1Chr09:47233101–47242848 (+)3.528e-12
Glyma.09G252300 hypothetical protein AT5G16520:AT5G16520:uncharacterized protein 1Chr09:47254519–47261787 (-)3.528e-12
Glyma.10G263800 hypothetical protein AT1G23010:LPR1:Cupredoxin superfamily protein 1Chr10:48805999–48811533 (-)7.252e-11
Glyma.11G240600 hypothetical protein NA 1Chr11:33491895–33493311 (+)7.19e-14
Glyma.11G241300 hypothetical protein AT4G39990:RABA4B:RAB GTPase homolog A4B 1Chr11:33552339–33555298 (+)3.461e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)9.748e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)9.748e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)6.317e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)4.174e-14
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)4.174e-14
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)4.145e-13
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)4.436e-14
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)8.518e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.469e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)8.518e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)8.518e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)3.225e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)1.938e-13
Glyma.16G172800 hypothetical protein AT3G49142:AT3G49142:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:33359317–33362446 (+)1.972e-11
Glyma.16G176900 hypothetical protein NA 1Chr16:33828244–33834767 (+)2.131e-11
Glyma.16G177000 hypothetical protein NA 1Chr16:33837701–33839617 (-)2.131e-11
Glyma.16G178900 hypothetical protein AT4G25720:QC:glutaminyl cyclase 1Chr16:33954446–33960344 (+)7.282e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)9.443e-22
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)1.878e-13
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)6.031e-11
Glyma.16G219700 hypothetical protein NA 1Chr16:37690133–37695529 (-)5.372e-11
Glyma.17G144400 hypothetical protein NA 1Chr17:11801158–11803913 (+)7.773e-16
Glyma.17G144600 hypothetical protein NA 1Chr17:11840299–11840904 (+)4.259e-11
Glyma.17G215300 hypothetical protein AT5G25265:AT5G25265:Hyp O-arabinosyltransferase-like protein 1Chr17:36142245–36146771 (-)4.359e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)4.771e-11
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)3.187e-11
Glyma.18G019900 hypothetical protein AT5G65205:AT5G65205:NAD(P)-binding Rossmann-fold superfamily protein__AT5G10050:AT5G10050:NAD(P)-binding Rossmann-fold … 1Chr18:1470650–1473673 (-)3.604e-13
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)3.363e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)1.521e-12
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)4.373e-14
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)5.304e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)5.304e-11
Glyma.20G109600 hypothetical protein AT3G14290:PAE2:20S proteasome alpha subunit E2__AT1G53850:PAE1:20S proteasome alpha subunit E1 1Chr20:35200934–35205885 (-)6.495e-11
Glyma.20G110000 hypothetical protein AT3G54260:TBL36:TRICHOME BIREFRINGENCE-LIKE 36 1Chr20:35229423–35231861 (+)4.054e-11