Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P42246

Metabolite ID
P42246
Deionized mass
1097.0166 Da
Average m/z
1098.0239
Average RT
21.2397
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
136
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

136 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)8.298e-11
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)5.163e-12
Glyma.01G045600 hypothetical protein NA 2Chr01:5242432–5245038 (-)1.956e-11
Glyma.01G126800 hypothetical protein NA 2Chr01:43602195–43612710 (+)8.563e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)6.072e-13
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)3.86e-15
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)3.86e-15
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)2.621e-11
Glyma.14G171400 hypothetical protein NA 2Chr14:42398866–42404627 (+)3.3e-11
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)2.648e-12
Glyma.17G208400 hypothetical protein NA 2Chr17:34184145–34222159 (-)1.744e-11
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)1.606e-12
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)1.519e-11
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 2Chr18:47102746–47129707 (+)6.664e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)8.298e-11
Glyma.20G120200 hypothetical protein NA 2Chr20:36268998–36282456 (-)6.816e-12
Glyma.01G045700 hypothetical protein AT1G69680:AT1G69680:ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction cen… 1Chr01:5265956–5271379 (-)1.957e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)4.476e-13
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)3.193e-11
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)1.84e-12
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)8.947e-12
Glyma.01G124800 hypothetical protein AT2G38320:TBL34:TRICHOME BIREFRINGENCE-LIKE 34 1Chr01:43072403–43076304 (+)3.116e-11
Glyma.01G125400 hypothetical protein NA 1Chr01:43394231–43404097 (-)3.116e-11
Glyma.01G125500 hypothetical protein NA 1Chr01:43398981–43401979 (+)3.116e-11
Glyma.01G126000 hypothetical protein AT5G01650:AT5G01650:Tautomerase/MIF superfamily protein 1Chr01:43477322–43480661 (-)3.116e-11
Glyma.01G126300 hypothetical protein NA 1Chr01:43513210–43516682 (-)3.116e-11
Glyma.01G126400 hypothetical protein NA 1Chr01:43526917–43529405 (-)3.116e-11
Glyma.01G126500 hypothetical protein NA 1Chr01:43543307–43549330 (-)3.116e-11
Glyma.01G126900 hypothetical protein NA 1Chr01:43632082–43635399 (+)8.563e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)2.916e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)2.916e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)5.574e-16
Glyma.03G124500 hypothetical protein NA 1Chr03:33758928–33762195 (+)6.697e-12
Glyma.03G169700 hypothetical protein AT2G20240:TRM17:GPI-anchored adhesin-like protein, putative (DUF3741)__AT4G28760:TRM20:methyl-coenzyme M reductase II s… 1Chr03:38442950–38448706 (+)1.035e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)3.719e-15
Glyma.04G014300 hypothetical protein AT1G20880:AT1G20880:RNA-binding (RRM/RBD/RNP motifs) family protein 1Chr04:1101709–1106543 (+)8.104e-11
Glyma.04G014600 hypothetical protein NA 1Chr04:1119108–1123175 (+)8.102e-11
Glyma.04G063900 hypothetical protein NA 1Chr04:5310107–5313853 (+)1.237e-12
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)1.22e-11
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)1.819e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)1.059e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.227e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.227e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.875e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.774e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.774e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.774e-11
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)2.126e-11
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)1.188e-11
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)5.64e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.882e-18
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.72e-19
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)3.122e-11
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)6.716e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.654e-13
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.654e-13
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)1.683e-11
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)5.122e-11
Glyma.06G200200 hypothetical protein NA 1Chr06:18327920–18331068 (-)5.178e-11
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)9.447e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)1.456e-11
Glyma.07G021100 hypothetical protein NA 1Chr07:1647678–1650627 (+)2.406e-11
Glyma.07G021600 hypothetical protein AT5G48930:HCT:hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 1Chr07:1673827–1680014 (-)2.406e-11
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)2.239e-11
Glyma.07G071800 hypothetical protein AT4G20960:PyrD:Cytidine/deoxycytidylate deaminase family protein 1Chr07:6523253–6526707 (+)2.125e-11
Glyma.07G095400 hypothetical protein NA 1Chr07:8914725–8920132 (+)3.346e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)2.126e-11
Glyma.08G182000 hypothetical protein NA 1Chr08:14601875–14604750 (+)1.244e-11
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)4.999e-12
Glyma.11G110300 hypothetical protein AT2G16530:AT2G16530:3-oxo-5-alpha-steroid 4-dehydrogenase family protein__AT1G72590:AT1G72590:3-oxo-5-alpha-steroid 4-d… 1Chr11:8402144–8406496 (-)1.977e-11
Glyma.11G179000 hypothetical protein AT2G27230:LHW:transcription factor-like protein 1Chr11:24412040–24417199 (+)2.035e-11
Glyma.11G228400 hypothetical protein AT2G40070:AT2G40070:flocculation FLO11-like protein 1Chr11:32375284–32381183 (-)1.425e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)3.334e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)3.334e-12
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.146e-13
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.146e-13
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)6.379e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)2.17e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)2.17e-12
Glyma.13G049100 hypothetical protein NA 1Chr13:14498952–14506408 (-)1.103e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)3.861e-15
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)3.861e-15
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.771e-14
Glyma.13G142200 hypothetical protein AT1G33410:SAR1:SUPPRESSOR OF AUXIN RESISTANCE1 1Chr13:25483702–25502265 (+)4.486e-11
Glyma.13G168300 hypothetical protein AT5G20110:AT5G20110:Dynein light chain type 1 family protein 1Chr13:28265646–28268213 (+)2.025e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)3.882e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.96e-13
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)4.548e-13
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)2.621e-11
Glyma.14G171200 hypothetical protein AT1G19970:AT1G19970:ER lumen protein retaining receptor family protein 1Chr14:42387905–42389129 (+)3.3e-11
Glyma.14G190100 hypothetical protein AT2G04280:AT2G04280:calcium ion-binding protein 1Chr14:45502008–45504459 (+)9.544e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)2.648e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)4.071e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)5.87e-13
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)4.071e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)4.071e-13
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.736e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)3.739e-15
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)2.494e-11
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)2.494e-11
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)2.399e-13
Glyma.16G137800 hypothetical protein NA 1Chr16:29480352–29487400 (-)8.916e-11
Glyma.16G138500 hypothetical protein NA 1Chr16:29564872–29566190 (+)5.027e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)5e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)8.46e-19
Glyma.16G140000 hypothetical protein AT5G01820:SR1:serine/threonine protein kinase 1 1Chr16:29738375–29739010 (+)5.415e-13
Glyma.16G161500 hypothetical protein NA 1Chr16:32076715–32092322 (-)3.387e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)8.792e-11
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)5.163e-12
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)9.391e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)9.391e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)2.017e-14
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)2.017e-14
Glyma.17G207000 hypothetical protein NA 1Chr17:33925621–33935113 (+)1.744e-11
Glyma.17G208500 hypothetical protein NA 1Chr17:34224093–34230310 (-)1.744e-11
Glyma.17G209600 hypothetical protein AT2G25530:AT2G25530:AFG1-like ATPase family protein 1Chr17:34571688–34581787 (-)1.744e-11
Glyma.17G209700 hypothetical protein NA 1Chr17:34586468–34590309 (+)1.744e-11
Glyma.17G211500 hypothetical protein AT4G32272:AT4G32272:Nucleotide/sugar transporter family protein 1Chr17:34916813–34922875 (+)5.799e-11
Glyma.17G211600 hypothetical protein NA 1Chr17:34925097–34929797 (+)3.742e-11
Glyma.17G212300 hypothetical protein AT5G25310:AT5G25310:Exostosin family protein 1Chr17:35122156–35129564 (-)3.769e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)2.627e-13
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)1.606e-12
Glyma.18G042300 hypothetical protein AT1G66140:ZFP4:zinc finger protein 4 1Chr18:3586380–3589732 (+)5.998e-11
Glyma.18G042500 hypothetical protein NA 1Chr18:3597323–3598404 (-)5.998e-11
Glyma.18G099700 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr18:10459970–10464888 (-)9.557e-13
Glyma.18G100300 hypothetical protein NA 1Chr18:10523838–10534676 (+)1.327e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)3.653e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)9.97e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.088e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.088e-12
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)1.82e-14
Glyma.20G101700 hypothetical protein AT5G08580:AT5G08580:Calcium-binding EF hand family protein 1Chr20:34467936–34475476 (-)4.245e-14
Glyma.20G105500 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein__AT5G05320:AT5G05320:FAD/NAD(P)-binding oxidoreduc… 1Chr20:34813357–34815998 (-)4.972e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)4.872e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)1.437e-11
Glyma.20G107700 hypothetical protein AT2G16860:AT2G16860:GCIP-interacting family protein 1Chr20:35033414–35036538 (+)2.905e-11