Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P42014

Metabolite ID
P42014
Deionized mass
553.7479 Da
Average m/z
554.7534
Average RT
21.0806
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
56
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

56 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)6.32e-13
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)2.244e-15
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)3.976e-12
Glyma.03G016700 hypothetical protein AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 2Chr03:1683395–1688893 (-)8.85e-12
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)7.487e-13
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)3.145e-14
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)2.077e-11
Glyma.02G169600 hypothetical protein AT2G42520:AT2G42520:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr02:26174033–26188929 (+)2.837e-11
Glyma.02G170000 hypothetical protein AT4G04480:AT4G04480:F-box protein with a domain protein 1Chr02:26335532–26336463 (+)2.837e-11
Glyma.02G176800 hypothetical protein AT5G06839:TGA10:bZIP transcription factor family protein 1Chr02:29019977–29028838 (-)1.762e-11
Glyma.02G303600 hypothetical protein NA 1Chr02:47883626–47887124 (-)2.935e-11
Glyma.02G303700 hypothetical protein NA 1Chr02:47892900–47896207 (+)2.935e-11
Glyma.02G304000 hypothetical protein AT1G51350:AT1G51350:ARM repeat superfamily protein 1Chr02:47908136–47915999 (-)2.935e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)4.749e-13
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)9.991e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)6.382e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)7.01e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)7.01e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)7.01e-12
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)4.813e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.438e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)8.012e-14
Glyma.06G081600 hypothetical protein AT5G11490:AT5G11490:adaptin family protein 1Chr06:6273644–6283819 (+)1.122e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)2.166e-13
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)2.166e-13
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)6.058e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)6.057e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 1Chr07:1697119–1698666 (+)4.284e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)9.751e-11
Glyma.08G132700 hypothetical protein NA 1Chr08:10163807–10167725 (-)2.872e-11
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)8.225e-11
Glyma.11G061800 hypothetical protein NA 1Chr11:4632831–4633552 (+)5.715e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)6.373e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)6.373e-12
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)1.47e-14
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)3.145e-14
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)4.66e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)6.32e-13
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)7.189e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)4.358e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)4.358e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)4.358e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.584e-11
Glyma.16G050900 COL16 NA 1Chr16:4874634–4878624 (+)7.779e-12
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)7.659e-13
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)3.976e-12
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)3.976e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)2.017e-15
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)7.899e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)1.014e-14
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)2.917e-12
Glyma.17G258700 hypothetical protein AT4G24190:SHD:Chaperone protein htpG family protein 1Chr17:41280124–41284980 (-)8.908e-12
Glyma.18G021700 hypothetical protein NA 1Chr18:1590986–1596262 (-)5.361e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)4.839e-11
Glyma.20G198400 hypothetical protein NA 1Chr20:43601702–43633244 (+)8.691e-11
Glyma.20G198600 hypothetical protein AT5G51150:AT5G51150:Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein 1Chr20:43634710–43639892 (-)8.691e-11