Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P41954

Metabolite ID
P41954
Deionized mass
818.9787 Da
Average m/z
819.9852
Average RT
21.0669
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
62
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

62 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G147900 hypothetical protein NA 4Chr16:30864919–30872425 (+)2.15e-13
Glyma.15G192700 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 3Chr15:21029024–21058079 (-)3.952e-13
Glyma.20G105300 hypothetical protein AT4G38470:STY46:ACT-like protein tyrosine kinase family protein 3Chr20:34757381–34771672 (+)8.879e-12
Glyma.03G242800 hypothetical protein AT4G08630:AT4G08630:fas-binding factor-like protein 2Chr03:44064511–44073939 (+)2.913e-11
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)4.274e-12
Glyma.16G146700 hypothetical protein NA 2Chr16:30755899–30759360 (-)1.276e-11
Glyma.16G147400 hypothetical protein NA 2Chr16:30817535–30821568 (+)2.707e-12
Glyma.16G189500 hypothetical protein NA 2Chr16:35202920–35206459 (-)6.71e-11
Glyma.01G017900 hypothetical protein NA 1Chr01:1734474–1735545 (+)2.304e-12
Glyma.01G021600 hypothetical protein AT5G65540:AT5G65540:transcription initiation factor TFIID subunit 1Chr01:2189923–2194362 (-)6.304e-11
Glyma.02G294900 hypothetical protein AT5G55220:AT5G55220:trigger factor type chaperone family protein 1Chr02:47300149–47306133 (+)7.793e-11
Glyma.02G295000 hypothetical protein AT4G26770:AT4G26770:Phosphatidate cytidylyltransferase family protein 1Chr02:47306160–47312036 (-)7.793e-11
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)8.268e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)4.005e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)8.788e-13
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)5.61e-12
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)5.61e-12
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)5.61e-12
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)1.37e-11
Glyma.07G068200 hypothetical protein AT4G00310:EDA8:Putative membrane lipoprotein 1Chr07:6146155–6148036 (-)2.405e-11
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)8.976e-12
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)8.976e-12
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)1.173e-13
Glyma.09G246700 hypothetical protein AT1G22840:CYTC-1:CYTOCHROME C-1 1Chr09:46835469–46838091 (-)3.406e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)4.985e-11
Glyma.10G238200 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr10:46680865–46684088 (+)3.97e-11
Glyma.11G037100 hypothetical protein AT2G35660:CTF2A:FAD/NAD(P)-binding oxidoreductase family protein 1Chr11:2678678–2681764 (-)2.217e-11
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)2.224e-14
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)3.766e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)3.766e-12
Glyma.12G203300 hypothetical protein AT4G03430:EMB2770:pre-mRNA splicing factor-like protein 1Chr12:36371465–36377700 (-)8.583e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)3.137e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.791e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)1.791e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)5.015e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)5.015e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)5.015e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)1.463e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)4.274e-12
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)7.661e-11
Glyma.14G204400 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr14:46936057–46943868 (-)6.052e-11
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)1.13e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.167e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.571e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.167e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.167e-11
Glyma.15G192400 hypothetical protein AT5G49150:GEX2:gamete expressed 2 1Chr15:20964449–20974340 (+)3.952e-13
Glyma.15G192900 hypothetical protein NA 1Chr15:21108370–21110353 (+)3.952e-13
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)5.163e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)4.468e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.871e-11
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)1.276e-11
Glyma.16G147500 hypothetical protein NA 1Chr16:30832490–30834904 (+)3.034e-11
Glyma.16G189400 hypothetical protein NA 1Chr16:35199461–35202266 (+)6.71e-11
Glyma.18G027300 hypothetical protein NA 1Chr18:2049280–2053959 (-)4.004e-12
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)6.107e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)5.757e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)1.78e-11
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)3.652e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)9.337e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)4.485e-13
Glyma.20G105900 hypothetical protein AT2G16990:AT2G16990:Major facilitator superfamily protein 1Chr20:34832271–34839955 (-)1.091e-11