Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P41895

Metabolite ID
P41895
Deionized mass
546.2227 Da
Average m/z
547.2329
Average RT
21.0026
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
44
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

44 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.15G192700 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 3Chr15:21029024–21058079 (-)2.194e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 3Chr16:35170253–35173950 (-)2.349e-15
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)9.714e-11
Glyma.02G116600 hypothetical protein AT1G13770:RUS3:root UVB sensitive protein (Protein of unknown function, DUF647) 1Chr02:11357006–11362220 (-)1.763e-11
Glyma.02G116700 hypothetical protein AT1G68980:AT1G68980:Tetratricopeptide repeat (TPR)-like superfamily protein__AT1G69290:AT1G69290:Pentatricopeptide repe… 1Chr02:11375844–11381371 (+)1.763e-11
Glyma.02G116800 hypothetical protein NA 1Chr02:11389946–11393074 (+)1.763e-11
Glyma.02G117100 hypothetical protein AT2G03620:MGT3:magnesium transporter 3 1Chr02:11400594–11409016 (-)1.763e-11
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)6.589e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)1.721e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)1.721e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)1.721e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)3.374e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)3.374e-11
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)1.69e-12
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)5.513e-12
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)7.025e-13
Glyma.07G068000 hypothetical protein AT3G61460:BRH1: 1Chr07:6128862–6129740 (+)2.506e-12
Glyma.07G068600 hypothetical protein NA 1Chr07:6192764–6197166 (+)7.232e-12
Glyma.07G071800 hypothetical protein AT4G20960:PyrD:Cytidine/deoxycytidylate deaminase family protein 1Chr07:6523253–6526707 (+)3.598e-12
Glyma.07G075000 hypothetical protein AT5G60990:AT5G60990:DEA(D/H)-box RNA helicase family protein 1Chr07:6821674–6829551 (-)5.387e-11
Glyma.07G075300 hypothetical protein NA 1Chr07:6843882–6845602 (-)5.387e-11
Glyma.07G075400 hypothetical protein NA 1Chr07:6849233–6853058 (+)5.721e-13
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)4.219e-11
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)2.896e-11
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)3.189e-12
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)3.885e-13
Glyma.11G241400 hypothetical protein AT4G40000:AT4G40000:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr11:33556332–33563163 (-)6.678e-13
Glyma.11G241900 hypothetical protein NA 1Chr11:33589346–33594428 (-)6.678e-13
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)5.533e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)5.533e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)5.533e-11
Glyma.15G192400 hypothetical protein AT5G49150:GEX2:gamete expressed 2 1Chr15:20964449–20974340 (+)2.194e-11
Glyma.15G192900 hypothetical protein NA 1Chr15:21108370–21110353 (+)2.194e-11
Glyma.15G216700 hypothetical protein NA 1Chr15:35649229–35652466 (-)2.997e-11
Glyma.15G216900 hypothetical protein NA 1Chr15:35680524–35686654 (-)2.997e-11
Glyma.15G217100 hypothetical protein NA 1Chr15:35830853–35832075 (-)2.997e-11
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)9.225e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)2.822e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)3.841e-11
Glyma.16G180000 hypothetical protein NA 1Chr16:34064572–34069421 (+)1.1e-11
Glyma.16G180100 hypothetical protein NA 1Chr16:34070806–34076053 (+)1.1e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)4.166e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)4.166e-13
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)2.688e-12