Overview Annotation GWAS Evidence Associated genes

P41872

Metabolite ID
P41872
Deionized mass
104.0253 Da
Average m/z
105.0327
Average RT
20.9852
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
6
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

6 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.18G104400 hypothetical protein AT2G42790:CSY3:citrate synthase 3 2Chr18:11482927–11506669 (-)2.815e-24
Glyma.01G037200 hypothetical protein NA 1Chr01:3946315–3948100 (-)8.661e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)6.16e-11
Glyma.18G102100 hypothetical protein AT1G50900:GDC1:Ankyrin repeat family protein 1Chr18:10822751–10828225 (+)2.815e-24
Glyma.18G104600 hypothetical protein AT2G42810:PP5.2:protein phosphatase 5.2 1Chr18:11541115–11551882 (-)2.815e-24
Glyma.18G104700 hypothetical protein NA 1Chr18:11598036–11603174 (+)2.815e-24