Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P41863

Metabolite ID
P41863
Deionized mass
548.0389 Da
Average m/z
549.0452
Average RT
20.9792
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
40
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

40 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)3.017e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)3.611e-14
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)4.188e-11
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 2Chr18:47102746–47129707 (+)7.318e-11
Glyma.01G037200 hypothetical protein NA 1Chr01:3946315–3948100 (-)1.018e-11
Glyma.02G295900 hypothetical protein NA 1Chr02:47375932–47378006 (+)1.317e-11
Glyma.02G296200 hypothetical protein AT5G55390:EDM2:ENHANCED DOWNY MILDEW 2 1Chr02:47383044–47395946 (-)1.317e-11
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)4.239e-13
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 1Chr03:1875182–1876855 (+)4.287e-13
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)1.539e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)8.651e-12
Glyma.03G242800 hypothetical protein AT4G08630:AT4G08630:fas-binding factor-like protein 1Chr03:44064511–44073939 (+)1.496e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)9.798e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.602e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.221e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)3.017e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)3.017e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)3.017e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)3.017e-11
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)3.576e-11
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)3.576e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)8.602e-16
Glyma.08G295700 hypothetical protein NA 1Chr08:41062905–41071504 (-)8.338e-11
Glyma.08G296900 hypothetical protein NA 1Chr08:41297891–41301852 (+)7.397e-12
Glyma.10G028500 hypothetical protein NA 1Chr10:2476846–2478953 (+)5.494e-11
Glyma.10G028700 hypothetical protein AT1G03090:MCCA:methylcrotonyl-CoA carboxylase alpha chain 1Chr10:2485817–2497071 (-)5.494e-11
Glyma.10G263800 hypothetical protein AT1G23010:LPR1:Cupredoxin superfamily protein 1Chr10:48805999–48811533 (-)3.73e-12
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)1.168e-11
Glyma.11G240600 hypothetical protein NA 1Chr11:33491895–33493311 (+)2.938e-11
Glyma.12G001400 hypothetical protein AT1G72090:AT1G72090:Methylthiotransferase 1Chr12:113763–118480 (+)9.86e-12
Glyma.12G001600 PM27 seed maturation protein PM27 AT1G22600:AT1G22600:Late embryosis abundant protein (LEA) family protein__AT1G72100:AT1G72100:late embryosis abundant d… 1Chr12:127545–128932 (+)9.86e-12
Glyma.12G001700 hypothetical protein AT1G22570:AT1G22570:Major facilitator superfamily protein__AT1G22550:AT1G22550:Major facilitator superfamily protein 1Chr12:132389–134935 (+)9.86e-12
Glyma.14G094200 hypothetical protein AT5G11840:AT5G11840:YCF36, putative (DUF1230) 1Chr14:8770378–8774149 (-)5.437e-12
Glyma.14G094300 hypothetical protein NA 1Chr14:8771316–8772515 (+)5.437e-12
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)1.014e-18
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)4.188e-11
Glyma.15G150300 hypothetical protein AT5G49130:AT5G49130:MATE efflux family protein 1Chr15:12416065–12418420 (-)8.968e-11
Glyma.19G102000 ICE2 AT3G26744:ICE1:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr19:34998146–35001862 (+)9.319e-11
Glyma.19G102200 hypothetical protein AT2G31410:AT2G31410:coiled-coil protein 1Chr19:35024582–35025690 (+)9.319e-11
Glyma.20G217100 hypothetical protein AT1G64640:ENODL8:early nodulin-like protein 8 1Chr20:45278452–45280126 (-)1.52e-11