Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P41854

Metabolite ID
P41854
Deionized mass
592.0756 Da
Average m/z
593.0849
Average RT
20.9770
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
47
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

47 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)5.865e-11
Glyma.02G188300 hypothetical protein NA 2Chr02:35008552–35027979 (-)5.662e-12
Glyma.08G295800 hypothetical protein NA 2Chr08:41100889–41103542 (-)2.012e-11
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 2Chr18:47102746–47129707 (+)4.894e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)5.865e-11
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)1.608e-11
Glyma.01G037200 hypothetical protein NA 1Chr01:3946315–3948100 (-)4.4e-14
Glyma.02G193800 hypothetical protein AT5G06470:AT5G06470:Glutaredoxin family protein 1Chr02:36706657–36712744 (-)5.145e-13
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)1.628e-11
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 1Chr03:1875182–1876855 (+)2.776e-12
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)1.188e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)1.449e-13
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)9.331e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.906e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)4.33e-11
Glyma.08G136700 hypothetical protein NA 1Chr08:10457207–10460163 (-)4.077e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)3.448e-12
Glyma.08G294800 hypothetical protein AT1G59710:AT1G59710:actin cross-linking protein (DUF569) 1Chr08:40993962–41001629 (+)2.873e-11
Glyma.08G294900 hypothetical protein AT1G59720:CRR28:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:41002768–41005138 (-)4.445e-11
Glyma.08G295700 hypothetical protein NA 1Chr08:41062905–41071504 (-)2.459e-12
Glyma.08G296900 hypothetical protein NA 1Chr08:41297891–41301852 (+)9.507e-12
Glyma.08G297300 hypothetical protein NA 1Chr08:41348301–41357671 (+)9.451e-11
Glyma.08G297500 hypothetical protein AT2G02790:IQD29:IQ-domain 29 1Chr08:41378414–41383832 (+)4.181e-12
Glyma.08G297600 hypothetical protein NA 1Chr08:41401567–41403823 (-)9.451e-11
Glyma.08G297700 hypothetical protein NA 1Chr08:41412445–41415775 (+)9.015e-11
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)2.127e-11
Glyma.10G028500 hypothetical protein NA 1Chr10:2476846–2478953 (+)6.668e-11
Glyma.10G028700 hypothetical protein AT1G03090:MCCA:methylcrotonyl-CoA carboxylase alpha chain 1Chr10:2485817–2497071 (-)6.668e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)8.392e-11
Glyma.10G263800 hypothetical protein AT1G23010:LPR1:Cupredoxin superfamily protein 1Chr10:48805999–48811533 (-)1.894e-12
Glyma.11G240600 hypothetical protein NA 1Chr11:33491895–33493311 (+)2.198e-12
Glyma.12G001400 hypothetical protein AT1G72090:AT1G72090:Methylthiotransferase 1Chr12:113763–118480 (+)3.116e-12
Glyma.12G001600 PM27 seed maturation protein PM27 AT1G22600:AT1G22600:Late embryosis abundant protein (LEA) family protein__AT1G72100:AT1G72100:late embryosis abundant d… 1Chr12:127545–128932 (+)3.116e-12
Glyma.12G001700 hypothetical protein AT1G22570:AT1G22570:Major facilitator superfamily protein__AT1G22550:AT1G22550:Major facilitator superfamily protein 1Chr12:132389–134935 (+)3.116e-12
Glyma.12G002400 hypothetical protein AT5G47850:CCR4:CRINKLY4 related 4 1Chr12:197288–200229 (+)2.882e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)3.037e-12
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)6.733e-12
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)3.761e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)4.549e-15
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)7.223e-11
Glyma.14G204400 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr14:46936057–46943868 (-)3.633e-11
Glyma.15G150300 hypothetical protein AT5G49130:AT5G49130:MATE efflux family protein 1Chr15:12416065–12418420 (-)9.678e-12
Glyma.15G150400 hypothetical protein AT3G06840:AT3G06840:uncharacterized protein 1Chr15:12436393–12437800 (-)1.073e-11
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)3.907e-11
Glyma.16G115800 hypothetical protein NA 1Chr16:25719040–25728740 (-)5.927e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)8.376e-11
Glyma.18G055400 hypothetical protein NA 1Chr18:4824726–4828902 (+)9.864e-11