Overview Annotation GWAS Evidence Associated genes

P41831

Metabolite ID
P41831
Deionized mass
541.0850 Da
Average m/z
542.0912
Average RT
20.9662
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
55
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

55 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)3.246e-11
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)9.138e-12
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 2Chr03:1875182–1876855 (+)2.902e-17
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)8.302e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)3.246e-11
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)9.624e-11
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)1.084e-14
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)2.712e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)2.488e-14
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)1.226e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.29e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.29e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.205e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)3.375e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)3.375e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)3.375e-12
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.706e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)2.625e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)6.693e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)5.91e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)5.91e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)7.295e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)7.295e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)7.295e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)7.03e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)8.302e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)8.302e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)8.302e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)8.302e-11
Glyma.08G136700 hypothetical protein NA 1Chr08:10457207–10460163 (-)5.365e-11
Glyma.08G142200 hypothetical protein NA 1Chr08:10833827–10834390 (-)9.703e-11
Glyma.08G142400 WRKY6 WRKY transcription factor 6 NA 1Chr08:10843433–10846761 (-)9.703e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)7.016e-11
Glyma.08G294800 hypothetical protein AT1G59710:AT1G59710:actin cross-linking protein (DUF569) 1Chr08:40993962–41001629 (+)1.506e-11
Glyma.08G295700 hypothetical protein NA 1Chr08:41062905–41071504 (-)8.612e-12
Glyma.08G296900 hypothetical protein NA 1Chr08:41297891–41301852 (+)3.542e-12
Glyma.08G297500 hypothetical protein AT2G02790:IQD29:IQ-domain 29 1Chr08:41378414–41383832 (+)5.651e-11
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)3.167e-11
Glyma.10G263800 hypothetical protein AT1G23010:LPR1:Cupredoxin superfamily protein 1Chr10:48805999–48811533 (-)2.33e-14
Glyma.10G265400 hypothetical protein AT2G01290:RPI2: 1Chr10:48921268–48922795 (+)2.789e-12
Glyma.10G266400 hypothetical protein NA 1Chr10:48984735–48993690 (+)1.405e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)3.473e-13
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)4.7e-13
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)2.734e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)2.128e-14
Glyma.15G150300 hypothetical protein AT5G49130:AT5G49130:MATE efflux family protein 1Chr15:12416065–12418420 (-)1.502e-12
Glyma.15G150400 hypothetical protein AT3G06840:AT3G06840:uncharacterized protein 1Chr15:12436393–12437800 (-)1.771e-12
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)9.138e-12
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)9.138e-12
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)9.138e-12
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)9.138e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)2.769e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)1.53e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)4.702e-13
Glyma.18G055400 hypothetical protein NA 1Chr18:4824726–4828902 (+)8.701e-12